Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24400 | 5' | -53.6 | NC_005264.1 | + | 814 | 0.69 | 0.869172 |
Target: 5'- ---uGggUGCGCGGCCg-GCuuuaGCCUCu -3' miRNA: 3'- uuuuCuuAUGCGCCGGgaCG----UGGAGc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 7394 | 0.69 | 0.845436 |
Target: 5'- ---cGAu--CGCGGCCCcgGCGCCgUCGu -3' miRNA: 3'- uuuuCUuauGCGCCGGGa-CGUGG-AGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 27233 | 0.7 | 0.837108 |
Target: 5'- ---cGAAUagcGCGCGGCCUucUGCGCuCUCu -3' miRNA: 3'- uuuuCUUA---UGCGCCGGG--ACGUG-GAGc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 156705 | 0.7 | 0.801921 |
Target: 5'- ---cGGGcGCGCGGCCCUcGC-CCUCc -3' miRNA: 3'- uuuuCUUaUGCGCCGGGA-CGuGGAGc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 150637 | 0.73 | 0.652058 |
Target: 5'- -cGAGGcgGCGCGcaucGCCCUGCgaccauGCCUCGg -3' miRNA: 3'- uuUUCUuaUGCGC----CGGGACG------UGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 11496 | 0.68 | 0.916516 |
Target: 5'- cGAAGGccGCGCGGCCCuUGC-CCa-- -3' miRNA: 3'- uUUUCUuaUGCGCCGGG-ACGuGGagc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 128708 | 0.67 | 0.922301 |
Target: 5'- uGGGGGAgGCG-GGCUC-GCGCCUCGa -3' miRNA: 3'- uUUUCUUaUGCgCCGGGaCGUGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 90743 | 0.66 | 0.965569 |
Target: 5'- cGAGAG-AUACGCGGCcauuacgaccgcgaCCaGCACgUCGu -3' miRNA: 3'- -UUUUCuUAUGCGCCG--------------GGaCGUGgAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 97892 | 0.66 | 0.9632 |
Target: 5'- cAGAGAAUucCGCGGCCUcGCGaaggcUCUCGc -3' miRNA: 3'- uUUUCUUAu-GCGCCGGGaCGU-----GGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 70793 | 0.66 | 0.9632 |
Target: 5'- cAAGGA--GCGCGGCCCaccgACCUCc -3' miRNA: 3'- uUUUCUuaUGCGCCGGGacg-UGGAGc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 162736 | 0.66 | 0.955808 |
Target: 5'- aAAAGGAAacucgaGCGGCCCgcgUGCGCCg-- -3' miRNA: 3'- -UUUUCUUaug---CGCCGGG---ACGUGGagc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 39431 | 0.66 | 0.951759 |
Target: 5'- --cAGAcUACuagcugGCGGUUCUGCAUCUCGc -3' miRNA: 3'- uuuUCUuAUG------CGCCGGGACGUGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 92724 | 0.66 | 0.955414 |
Target: 5'- -cGGGAGUACGCGGCagcucgauaagguCCUccGCGCCg-- -3' miRNA: 3'- uuUUCUUAUGCGCCG-------------GGA--CGUGGagc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 51104 | 0.66 | 0.947468 |
Target: 5'- ----cGGUGCuGCGGUCUgcucGCGCCUCGa -3' miRNA: 3'- uuuucUUAUG-CGCCGGGa---CGUGGAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 4779 | 0.66 | 0.947468 |
Target: 5'- ------cUGCGCGGCgCCguucgcGCACCUCc -3' miRNA: 3'- uuuucuuAUGCGCCG-GGa-----CGUGGAGc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 67302 | 0.67 | 0.942933 |
Target: 5'- cGAAGggUAuCGCGGCg--GCGCCUUc -3' miRNA: 3'- uUUUCuuAU-GCGCCGggaCGUGGAGc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 92652 | 0.67 | 0.942933 |
Target: 5'- -------cGCGUGGCCCUcGCGCCg-- -3' miRNA: 3'- uuuucuuaUGCGCCGGGA-CGUGGagc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 157353 | 0.67 | 0.93815 |
Target: 5'- -cGAGggUugGCgGGCCCUG-GCCg-- -3' miRNA: 3'- uuUUCuuAugCG-CCGGGACgUGGagc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 64294 | 0.67 | 0.933118 |
Target: 5'- ---cGAGUAuCGCGGCCCacaGCGCgUUGc -3' miRNA: 3'- uuuuCUUAU-GCGCCGGGa--CGUGgAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 33 | 0.67 | 0.933118 |
Target: 5'- --------cCGCGGCCCUaGCugUUCGa -3' miRNA: 3'- uuuucuuauGCGCCGGGA-CGugGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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