Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24400 | 5' | -53.6 | NC_005264.1 | + | 92652 | 0.67 | 0.942933 |
Target: 5'- -------cGCGUGGCCCUcGCGCCg-- -3' miRNA: 3'- uuuucuuaUGCGCCGGGA-CGUGGagc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 157353 | 0.67 | 0.93815 |
Target: 5'- -cGAGggUugGCgGGCCCUG-GCCg-- -3' miRNA: 3'- uuUUCuuAugCG-CCGGGACgUGGagc -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 64294 | 0.67 | 0.933118 |
Target: 5'- ---cGAGUAuCGCGGCCCacaGCGCgUUGc -3' miRNA: 3'- uuuuCUUAU-GCGCCGGGa--CGUGgAGC- -5' |
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24400 | 5' | -53.6 | NC_005264.1 | + | 78648 | 0.76 | 0.507511 |
Target: 5'- -------cGCgGCGGCCCUGUGCCUCGu -3' miRNA: 3'- uuuucuuaUG-CGCCGGGACGUGGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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