miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24401 3' -53.1 NC_005264.1 + 81672 0.66 0.974127
Target:  5'- --uUGGGGuCGUuccuggccgUGGUGAUCagCGCGu -3'
miRNA:   3'- uuuAUCCC-GCA---------ACCACUAGagGCGCc -5'
24401 3' -53.1 NC_005264.1 + 123082 0.66 0.974127
Target:  5'- ----uGGGCGacGG-GAUCUCCcgacaGCGGg -3'
miRNA:   3'- uuuauCCCGCaaCCaCUAGAGG-----CGCC- -5'
24401 3' -53.1 NC_005264.1 + 4055 0.66 0.974127
Target:  5'- ----uGGGCGacGG-GAUCUCCcgacaGCGGg -3'
miRNA:   3'- uuuauCCCGCaaCCaCUAGAGG-----CGCC- -5'
24401 3' -53.1 NC_005264.1 + 146413 0.66 0.971349
Target:  5'- -cGUAGGGCGggUGcUGAuggcUCgaugCCGCGGc -3'
miRNA:   3'- uuUAUCCCGCa-ACcACU----AGa---GGCGCC- -5'
24401 3' -53.1 NC_005264.1 + 120005 0.66 0.968363
Target:  5'- --cUGGGGCGgcaGGUGGgcCUCCccccucGCGGa -3'
miRNA:   3'- uuuAUCCCGCaa-CCACUa-GAGG------CGCC- -5'
24401 3' -53.1 NC_005264.1 + 59750 0.67 0.965162
Target:  5'- -cAUGGGGCGgcGGcugcgacgcgGAcgCUUCGCGGg -3'
miRNA:   3'- uuUAUCCCGCaaCCa---------CUa-GAGGCGCC- -5'
24401 3' -53.1 NC_005264.1 + 979 0.67 0.954214
Target:  5'- --cUGGGGCGgcaGGUGGgcCUCCcccucGCGGa -3'
miRNA:   3'- uuuAUCCCGCaa-CCACUa-GAGG-----CGCC- -5'
24401 3' -53.1 NC_005264.1 + 59027 0.69 0.914475
Target:  5'- ---cAGGcGCGUcaGGUcGGUCUCCGCGc -3'
miRNA:   3'- uuuaUCC-CGCAa-CCA-CUAGAGGCGCc -5'
24401 3' -53.1 NC_005264.1 + 21058 0.69 0.902082
Target:  5'- ---aGGGGCGUguaGGccaagGAUCuucuUCCGCGGc -3'
miRNA:   3'- uuuaUCCCGCAa--CCa----CUAG----AGGCGCC- -5'
24401 3' -53.1 NC_005264.1 + 93451 0.69 0.888724
Target:  5'- -----uGGCGcaGGUGGUCgCCGCGGa -3'
miRNA:   3'- uuuaucCCGCaaCCACUAGaGGCGCC- -5'
24401 3' -53.1 NC_005264.1 + 79436 0.69 0.888724
Target:  5'- ----uGGGCGgugcGG-GGUCUCCGgGGg -3'
miRNA:   3'- uuuauCCCGCaa--CCaCUAGAGGCgCC- -5'
24401 3' -53.1 NC_005264.1 + 157262 0.72 0.771768
Target:  5'- ----cGGcGCGUUggaGGUGGUCUCCGCa- -3'
miRNA:   3'- uuuauCC-CGCAA---CCACUAGAGGCGcc -5'
24401 3' -53.1 NC_005264.1 + 69679 0.76 0.547353
Target:  5'- --cUGGGGCcUUGGU--UCUCCGCGGu -3'
miRNA:   3'- uuuAUCCCGcAACCAcuAGAGGCGCC- -5'
24401 3' -53.1 NC_005264.1 + 112560 1.08 0.006801
Target:  5'- gAAAUAGGGCGUUGGUGAUCUCCGCGGc -3'
miRNA:   3'- -UUUAUCCCGCAACCACUAGAGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.