miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24401 5' -56.9 NC_005264.1 + 138775 0.66 0.881383
Target:  5'- gUCCCCAGAuucagauuauagcaGCUAUCuAACAGGCaACg -3'
miRNA:   3'- -AGGGGUCUc-------------CGGUGGuUUGUCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 74821 0.66 0.878545
Target:  5'- gCCCCgaGGAacguGGgCACCAGggGCAGGCUu- -3'
miRNA:   3'- aGGGG--UCU----CCgGUGGUU--UGUCCGAug -5'
24401 5' -56.9 NC_005264.1 + 111749 0.66 0.878545
Target:  5'- aCCgCAGcaccGGCgACCGcgaAGCAGGCUAg -3'
miRNA:   3'- aGGgGUCu---CCGgUGGU---UUGUCCGAUg -5'
24401 5' -56.9 NC_005264.1 + 148405 0.66 0.878545
Target:  5'- -gCCUauuggggagGGcAGGCCGCCAuACGGGCgugggACg -3'
miRNA:   3'- agGGG---------UC-UCCGGUGGUuUGUCCGa----UG- -5'
24401 5' -56.9 NC_005264.1 + 147551 0.66 0.878545
Target:  5'- uUCCCgCGGcgcgaaguGGCCGCCGacgugugcGACGGGgaACg -3'
miRNA:   3'- -AGGG-GUCu-------CCGGUGGU--------UUGUCCgaUG- -5'
24401 5' -56.9 NC_005264.1 + 130638 0.66 0.874223
Target:  5'- --gUCGGAGGCCACCAgugcacacuugggggAGgGGGaCUACu -3'
miRNA:   3'- aggGGUCUCCGGUGGU---------------UUgUCC-GAUG- -5'
24401 5' -56.9 NC_005264.1 + 56744 0.66 0.874223
Target:  5'- uUCCgCGGAGGCCgagauuggcacgcacGCCAAGCAaGGaaACc -3'
miRNA:   3'- -AGGgGUCUCCGG---------------UGGUUUGU-CCgaUG- -5'
24401 5' -56.9 NC_005264.1 + 60699 0.66 0.871298
Target:  5'- cUCCgCAGAGGUCAgCAggUuguuGGCcGCg -3'
miRNA:   3'- -AGGgGUCUCCGGUgGUuuGu---CCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 158545 0.66 0.871298
Target:  5'- aCUCCAGGgccgcucuuacuGGCCAgCCAuGCAGGCc-- -3'
miRNA:   3'- aGGGGUCU------------CCGGU-GGUuUGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 72892 0.66 0.871298
Target:  5'- gCgCCAGcGGCCGCCG-AUGGGCg-- -3'
miRNA:   3'- aGgGGUCuCCGGUGGUuUGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 17273 0.66 0.871298
Target:  5'- gUCaaCGGAGGCgACgGGGCggaGGGCUGCc -3'
miRNA:   3'- -AGggGUCUCCGgUGgUUUG---UCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 5397 0.66 0.863834
Target:  5'- cUUgCCAGGGGCCAgCA---GGGCgUACg -3'
miRNA:   3'- -AGgGGUCUCCGGUgGUuugUCCG-AUG- -5'
24401 5' -56.9 NC_005264.1 + 143530 0.66 0.863834
Target:  5'- uUUCCUGGGGGCCugUgu-CcGGCUGCc -3'
miRNA:   3'- -AGGGGUCUCCGGugGuuuGuCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 124424 0.66 0.863834
Target:  5'- cUUgCCAGGGGCCAgCA---GGGCgUACg -3'
miRNA:   3'- -AGgGGUCUCCGGUgGUuugUCCG-AUG- -5'
24401 5' -56.9 NC_005264.1 + 114437 0.66 0.856161
Target:  5'- cCCCCAcccgcuccuGGCCGCCGcccGACGccccagucuaccGGCUGCg -3'
miRNA:   3'- aGGGGUcu-------CCGGUGGU---UUGU------------CCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 146501 0.66 0.856161
Target:  5'- gUCUCCcuGGGCCGCgCGGuucCAGaGCUACg -3'
miRNA:   3'- -AGGGGucUCCGGUG-GUUu--GUC-CGAUG- -5'
24401 5' -56.9 NC_005264.1 + 101224 0.66 0.856161
Target:  5'- cCCCCAGuauGCCGgCGgcGACGGGCUu- -3'
miRNA:   3'- aGGGGUCuc-CGGUgGU--UUGUCCGAug -5'
24401 5' -56.9 NC_005264.1 + 27774 0.66 0.856161
Target:  5'- uUCCCaCGGAuGGCCGCCGAcCAG-CUc- -3'
miRNA:   3'- -AGGG-GUCU-CCGGUGGUUuGUCcGAug -5'
24401 5' -56.9 NC_005264.1 + 69048 0.66 0.848285
Target:  5'- cUCUuuGGccgcGGCCGCCGGGCAGGUc-- -3'
miRNA:   3'- -AGGggUCu---CCGGUGGUUUGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 159763 0.66 0.848285
Target:  5'- gUCCUCGGccGCCGCCAGuCGcGGCgagACa -3'
miRNA:   3'- -AGGGGUCucCGGUGGUUuGU-CCGa--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.