miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24401 5' -56.9 NC_005264.1 + 88789 0.68 0.778819
Target:  5'- uUCCCUucgaGGGCCACCAacAACccuuGGGCgUGCa -3'
miRNA:   3'- -AGGGGuc--UCCGGUGGU--UUG----UCCG-AUG- -5'
24401 5' -56.9 NC_005264.1 + 31349 0.68 0.760915
Target:  5'- cCCCCAGGugcucgggcacgcuuGCCguauccauucACCAAACAGGUUGCu -3'
miRNA:   3'- aGGGGUCUc--------------CGG----------UGGUUUGUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 126280 0.68 0.759961
Target:  5'- gUCCgCGGAGGCgGCCAugccgcuuuCGGGCg-- -3'
miRNA:   3'- -AGGgGUCUCCGgUGGUuu-------GUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 102682 0.68 0.750356
Target:  5'- gCUgaCAGAGGCCGCgCAccgUAGGCUGCu -3'
miRNA:   3'- aGGg-GUCUCCGGUG-GUuu-GUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 125753 0.68 0.759961
Target:  5'- gUCCCCGGAacuGCCGCCGcgucgcuagaAACAGcCUGCc -3'
miRNA:   3'- -AGGGGUCUc--CGGUGGU----------UUGUCcGAUG- -5'
24401 5' -56.9 NC_005264.1 + 31892 0.68 0.778819
Target:  5'- aCCCCAGcGGCgACCGugggaaaaucuGCGGGCa-- -3'
miRNA:   3'- aGGGGUCuCCGgUGGUu----------UGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 2599 0.67 0.79715
Target:  5'- gUCUCCAaaggaGaAGGCgcgaGCCGAGCAGGCgggGCg -3'
miRNA:   3'- -AGGGGU-----C-UCCGg---UGGUUUGUCCGa--UG- -5'
24401 5' -56.9 NC_005264.1 + 159833 0.67 0.79715
Target:  5'- aCCCCAGAGccgaGCCGCCGGcccaguCGGcGCUcGCa -3'
miRNA:   3'- aGGGGUCUC----CGGUGGUUu-----GUC-CGA-UG- -5'
24401 5' -56.9 NC_005264.1 + 115915 0.67 0.806095
Target:  5'- gUCCCCGuagcaguccuuGAGaGCCGCgAAcacgcggcGCAGGCUAg -3'
miRNA:   3'- -AGGGGU-----------CUC-CGGUGgUU--------UGUCCGAUg -5'
24401 5' -56.9 NC_005264.1 + 104838 0.67 0.814883
Target:  5'- gUCCgCCGG-GGCCGCUGAGCcacGGCcGCc -3'
miRNA:   3'- -AGG-GGUCuCCGGUGGUUUGu--CCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 2810 0.67 0.823503
Target:  5'- gCCUgGGAGcCCACCuAAACGGGUUGg -3'
miRNA:   3'- aGGGgUCUCcGGUGG-UUUGUCCGAUg -5'
24401 5' -56.9 NC_005264.1 + 53318 0.67 0.823503
Target:  5'- -gCCCAGGGGCUGCUuggccAGCAGGg-GCa -3'
miRNA:   3'- agGGGUCUCCGGUGGu----UUGUCCgaUG- -5'
24401 5' -56.9 NC_005264.1 + 121836 0.67 0.823503
Target:  5'- gCCUgGGAGcCCACCuAAACGGGUUGg -3'
miRNA:   3'- aGGGgUCUCcGGUGG-UUUGUCCGAUg -5'
24401 5' -56.9 NC_005264.1 + 155174 0.67 0.814883
Target:  5'- gCCCaUGGAGGCCGagcccuCCGAgccgGCAGGCgGCg -3'
miRNA:   3'- aGGG-GUCUCCGGU------GGUU----UGUCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 121626 0.67 0.79715
Target:  5'- gUCUCCAaaggaGaAGGCgcgaGCCGAGCAGGCgggGCg -3'
miRNA:   3'- -AGGGGU-----C-UCCGg---UGGUUUGUCCGa--UG- -5'
24401 5' -56.9 NC_005264.1 + 36147 0.67 0.814883
Target:  5'- gCCCaUGGAGGCCGagcccuCCGAgccgGCAGGCgGCg -3'
miRNA:   3'- aGGG-GUCUCCGGU------GGUU----UGUCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 40737 0.66 0.848285
Target:  5'- gUCCUCGGccGCCGCCAGuCGcGGCgagACa -3'
miRNA:   3'- -AGGGGUCucCGGUGGUUuGU-CCGa--UG- -5'
24401 5' -56.9 NC_005264.1 + 159763 0.66 0.848285
Target:  5'- gUCCUCGGccGCCGCCAGuCGcGGCgagACa -3'
miRNA:   3'- -AGGGGUCucCGGUGGUUuGU-CCGa--UG- -5'
24401 5' -56.9 NC_005264.1 + 27774 0.66 0.856161
Target:  5'- uUCCCaCGGAuGGCCGCCGAcCAG-CUc- -3'
miRNA:   3'- -AGGG-GUCU-CCGGUGGUUuGUCcGAug -5'
24401 5' -56.9 NC_005264.1 + 101224 0.66 0.856161
Target:  5'- cCCCCAGuauGCCGgCGgcGACGGGCUu- -3'
miRNA:   3'- aGGGGUCuc-CGGUgGU--UUGUCCGAug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.