Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24401 | 5' | -56.9 | NC_005264.1 | + | 112594 | 1.09 | 0.002213 |
Target: 5'- gUCCCCAGAGGCCACCAAACAGGCUACc -3' miRNA: 3'- -AGGGGUCUCCGGUGGUUUGUCCGAUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 29429 | 0.77 | 0.291277 |
Target: 5'- gUCCgCGuaggcuuuGGGGCCACC-AACGGGCUGCg -3' miRNA: 3'- -AGGgGU--------CUCCGGUGGuUUGUCCGAUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 146361 | 0.75 | 0.357558 |
Target: 5'- aCCCCGcAGGCCACC--GC-GGCUGCg -3' miRNA: 3'- aGGGGUcUCCGGUGGuuUGuCCGAUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 117952 | 0.75 | 0.373653 |
Target: 5'- cCCCCAGAcgacgacgGGcCCGCCucccCAGGCUGCa -3' miRNA: 3'- aGGGGUCU--------CC-GGUGGuuu-GUCCGAUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 52329 | 0.75 | 0.398701 |
Target: 5'- gCUUCAG-GGUCGCUggGCGGGCUGCc -3' miRNA: 3'- aGGGGUCuCCGGUGGuuUGUCCGAUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 106765 | 0.74 | 0.442753 |
Target: 5'- uUCCCUcguccuacggcuAGAGGCgucUACaCAGACGGGCUGCu -3' miRNA: 3'- -AGGGG------------UCUCCG---GUG-GUUUGUCCGAUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 63721 | 0.74 | 0.442753 |
Target: 5'- -aCCCAGAGGCgucuauccacgcCACCAGAC-GGCUAa -3' miRNA: 3'- agGGGUCUCCG------------GUGGUUUGuCCGAUg -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 39579 | 0.73 | 0.479898 |
Target: 5'- -gCCCAGAGaGuaugcugcccCCGCCAGACGGaGCUGCg -3' miRNA: 3'- agGGGUCUC-C----------GGUGGUUUGUC-CGAUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 158967 | 0.72 | 0.54824 |
Target: 5'- aCCCCGGgugGGGCCACgGcGACcucGGCUGCg -3' miRNA: 3'- aGGGGUC---UCCGGUGgU-UUGu--CCGAUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 39940 | 0.72 | 0.54824 |
Target: 5'- aCCCCGGgugGGGCCACgGcGACcucGGCUGCg -3' miRNA: 3'- aGGGGUC---UCCGGUGgU-UUGu--CCGAUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 141436 | 0.72 | 0.555259 |
Target: 5'- aCCUCGGAGGCCACCcucuccaucgaggcGAGC-GGCgggGCc -3' miRNA: 3'- aGGGGUCUCCGGUGG--------------UUUGuCCGa--UG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 132 | 0.72 | 0.558275 |
Target: 5'- cUCCCCGGcGGCCGCCuuAACGccGGCg-- -3' miRNA: 3'- -AGGGGUCuCCGGUGGu-UUGU--CCGaug -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 119159 | 0.72 | 0.558275 |
Target: 5'- cUCCCCGGcGGCCGCCuuAACGccGGCg-- -3' miRNA: 3'- -AGGGGUCuCCGGUGGu-UUGU--CCGaug -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 13308 | 0.71 | 0.598865 |
Target: 5'- cUCCCCGGAGGaCgGCCGcGCGGaGCa-- -3' miRNA: 3'- -AGGGGUCUCC-GgUGGUuUGUC-CGaug -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 132335 | 0.71 | 0.598865 |
Target: 5'- cUCCCCGGAGGaCgGCCGcGCGGaGCa-- -3' miRNA: 3'- -AGGGGUCUCC-GgUGGUuUGUC-CGaug -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 75310 | 0.7 | 0.650093 |
Target: 5'- cUCCUCGGAGGCCG-CGGGC-GGCUc- -3' miRNA: 3'- -AGGGGUCUCCGGUgGUUUGuCCGAug -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 157766 | 0.7 | 0.669521 |
Target: 5'- cUCCCCGGAcgggcuGGCCGCCuuGCgaccccugccagaAGGgUACg -3' miRNA: 3'- -AGGGGUCU------CCGGUGGuuUG-------------UCCgAUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 38740 | 0.7 | 0.669521 |
Target: 5'- cUCCCCGGAcgggcuGGCCGCCuuGCgaccccugccagaAGGgUACg -3' miRNA: 3'- -AGGGGUCU------CCGGUGGuuUG-------------UCCgAUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 45125 | 0.7 | 0.670541 |
Target: 5'- gUCCgCguGGGGCgaagaACCAGACAGGCgccACg -3' miRNA: 3'- -AGG-GguCUCCGg----UGGUUUGUCCGa--UG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 12640 | 0.7 | 0.670541 |
Target: 5'- aCCgC-GAGGCCGCCAAuguGGCUAUu -3' miRNA: 3'- aGGgGuCUCCGGUGGUUuguCCGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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