miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24401 5' -56.9 NC_005264.1 + 39077 0.69 0.680722
Target:  5'- cCCCCGGAcGCCgGCUcgGCGGGCaGCg -3'
miRNA:   3'- aGGGGUCUcCGG-UGGuuUGUCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 125612 0.69 0.680722
Target:  5'- cCCCCAGGGGCCG----ACAGGUcaacgGCg -3'
miRNA:   3'- aGGGGUCUCCGGUgguuUGUCCGa----UG- -5'
24401 5' -56.9 NC_005264.1 + 6585 0.69 0.680722
Target:  5'- cCCCCAGGGGCCG----ACAGGUcaacgGCg -3'
miRNA:   3'- aGGGGUCUCCGGUgguuUGUCCGa----UG- -5'
24401 5' -56.9 NC_005264.1 + 107683 0.69 0.680722
Target:  5'- -gCCCAGAGGCCGCau-AC--GCUGCg -3'
miRNA:   3'- agGGGUCUCCGGUGguuUGucCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 158104 0.69 0.680722
Target:  5'- cCCCCGGAcGCCgGCUcgGCGGGCaGCg -3'
miRNA:   3'- aGGGGUCUcCGG-UGGuuUGUCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 24035 0.69 0.700954
Target:  5'- -aCCCGGAGGUCGCCGuugccuguuaGAUAG-CUGCu -3'
miRNA:   3'- agGGGUCUCCGGUGGU----------UUGUCcGAUG- -5'
24401 5' -56.9 NC_005264.1 + 134929 0.69 0.709987
Target:  5'- gUCCCCAGGagcucGGCCgaucugcacgaaaGCCAAcGCGGGCaGCc -3'
miRNA:   3'- -AGGGGUCU-----CCGG-------------UGGUU-UGUCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 104885 0.69 0.710987
Target:  5'- cUUUCCGGgaacAGGCCucagGCCGAACAGGCg-- -3'
miRNA:   3'- -AGGGGUC----UCCGG----UGGUUUGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 62824 0.69 0.720954
Target:  5'- cCCCCGGAcGGCCACacuAUGGGuCUAa -3'
miRNA:   3'- aGGGGUCU-CCGGUGguuUGUCC-GAUg -5'
24401 5' -56.9 NC_005264.1 + 16964 0.69 0.730843
Target:  5'- aUCCCCacgagagcagaAGAGGCCGCCAuu--GGCc-- -3'
miRNA:   3'- -AGGGG-----------UCUCCGGUGGUuuguCCGaug -5'
24401 5' -56.9 NC_005264.1 + 87129 0.68 0.744543
Target:  5'- -gCCCGcGGGGCgCACCAgucuucgcgccgaaaGACGGcGCUGCg -3'
miRNA:   3'- agGGGU-CUCCG-GUGGU---------------UUGUC-CGAUG- -5'
24401 5' -56.9 NC_005264.1 + 112920 0.68 0.750356
Target:  5'- aUCCUCAGucGCCGCCA-GCGGGauuuggGCg -3'
miRNA:   3'- -AGGGGUCucCGGUGGUuUGUCCga----UG- -5'
24401 5' -56.9 NC_005264.1 + 102682 0.68 0.750356
Target:  5'- gCUgaCAGAGGCCGCgCAccgUAGGCUGCu -3'
miRNA:   3'- aGGg-GUCUCCGGUG-GUuu-GUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 125753 0.68 0.759961
Target:  5'- gUCCCCGGAacuGCCGCCGcgucgcuagaAACAGcCUGCc -3'
miRNA:   3'- -AGGGGUCUc--CGGUGGU----------UUGUCcGAUG- -5'
24401 5' -56.9 NC_005264.1 + 126280 0.68 0.759961
Target:  5'- gUCCgCGGAGGCgGCCAugccgcuuuCGGGCg-- -3'
miRNA:   3'- -AGGgGUCUCCGgUGGUuu-------GUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 31349 0.68 0.760915
Target:  5'- cCCCCAGGugcucgggcacgcuuGCCguauccauucACCAAACAGGUUGCu -3'
miRNA:   3'- aGGGGUCUc--------------CGG----------UGGUUUGUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 146947 0.68 0.768508
Target:  5'- -gCgCAGAGGCUggauggcgcugagGCC--GCAGGCUGCg -3'
miRNA:   3'- agGgGUCUCCGG-------------UGGuuUGUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 31892 0.68 0.778819
Target:  5'- aCCCCAGcGGCgACCGugggaaaaucuGCGGGCa-- -3'
miRNA:   3'- aGGGGUCuCCGgUGGUu----------UGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 88789 0.68 0.778819
Target:  5'- uUCCCUucgaGGGCCACCAacAACccuuGGGCgUGCa -3'
miRNA:   3'- -AGGGGuc--UCCGGUGGU--UUG----UCCG-AUG- -5'
24401 5' -56.9 NC_005264.1 + 150918 0.68 0.778819
Target:  5'- aCCCCAGcGGCgACCGugggaaaaucuGCGGGCa-- -3'
miRNA:   3'- aGGGGUCuCCGgUGGUu----------UGUCCGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.