Results 41 - 60 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24401 | 5' | -56.9 | NC_005264.1 | + | 124751 | 0.68 | 0.788055 |
Target: 5'- uUCCCgGGGGGCCAaggAAGCAcGGCggguagGCa -3' miRNA: 3'- -AGGGgUCUCCGGUgg-UUUGU-CCGa-----UG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 96641 | 0.68 | 0.788055 |
Target: 5'- gCCgCGGAGGCgCACCGcccgccgauGCGGGCggUGCg -3' miRNA: 3'- aGGgGUCUCCG-GUGGUu--------UGUCCG--AUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 3612 | 0.68 | 0.788055 |
Target: 5'- gCCgCgGGGGGCCGCgaGGGCGGGCg-- -3' miRNA: 3'- aGG-GgUCUCCGGUGg-UUUGUCCGaug -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 126092 | 0.68 | 0.788055 |
Target: 5'- aUCUCAGucuGGCCAgUAGGCGGGCa-- -3' miRNA: 3'- aGGGGUCu--CCGGUgGUUUGUCCGaug -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 122639 | 0.68 | 0.788055 |
Target: 5'- gCCgCgGGGGGCCGCgaGGGCGGGCg-- -3' miRNA: 3'- aGG-GgUCUCCGGUGg-UUUGUCCGaug -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 107188 | 0.68 | 0.788055 |
Target: 5'- --aCCGG-GGCCGCCAAAacuaaAGGCgGCg -3' miRNA: 3'- aggGGUCuCCGGUGGUUUg----UCCGaUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 121626 | 0.67 | 0.79715 |
Target: 5'- gUCUCCAaaggaGaAGGCgcgaGCCGAGCAGGCgggGCg -3' miRNA: 3'- -AGGGGU-----C-UCCGg---UGGUUUGUCCGa--UG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 2599 | 0.67 | 0.79715 |
Target: 5'- gUCUCCAaaggaGaAGGCgcgaGCCGAGCAGGCgggGCg -3' miRNA: 3'- -AGGGGU-----C-UCCGg---UGGUUUGUCCGa--UG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 159833 | 0.67 | 0.79715 |
Target: 5'- aCCCCAGAGccgaGCCGCCGGcccaguCGGcGCUcGCa -3' miRNA: 3'- aGGGGUCUC----CGGUGGUUu-----GUC-CGA-UG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 115915 | 0.67 | 0.806095 |
Target: 5'- gUCCCCGuagcaguccuuGAGaGCCGCgAAcacgcggcGCAGGCUAg -3' miRNA: 3'- -AGGGGU-----------CUC-CGGUGgUU--------UGUCCGAUg -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 104838 | 0.67 | 0.814883 |
Target: 5'- gUCCgCCGG-GGCCGCUGAGCcacGGCcGCc -3' miRNA: 3'- -AGG-GGUCuCCGGUGGUUUGu--CCGaUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 36147 | 0.67 | 0.814883 |
Target: 5'- gCCCaUGGAGGCCGagcccuCCGAgccgGCAGGCgGCg -3' miRNA: 3'- aGGG-GUCUCCGGU------GGUU----UGUCCGaUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 155174 | 0.67 | 0.814883 |
Target: 5'- gCCCaUGGAGGCCGagcccuCCGAgccgGCAGGCgGCg -3' miRNA: 3'- aGGG-GUCUCCGGU------GGUU----UGUCCGaUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 53318 | 0.67 | 0.823503 |
Target: 5'- -gCCCAGGGGCUGCUuggccAGCAGGg-GCa -3' miRNA: 3'- agGGGUCUCCGGUGGu----UUGUCCgaUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 121836 | 0.67 | 0.823503 |
Target: 5'- gCCUgGGAGcCCACCuAAACGGGUUGg -3' miRNA: 3'- aGGGgUCUCcGGUGG-UUUGUCCGAUg -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 2810 | 0.67 | 0.823503 |
Target: 5'- gCCUgGGAGcCCACCuAAACGGGUUGg -3' miRNA: 3'- aGGGgUCUCcGGUGG-UUUGUCCGAUg -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 43206 | 0.66 | 0.839394 |
Target: 5'- gCCgUAGAGGCUgagcccuACCAGugaauGCAGGCgGCa -3' miRNA: 3'- aGGgGUCUCCGG-------UGGUU-----UGUCCGaUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 142589 | 0.66 | 0.840212 |
Target: 5'- gUCCCCuGAaugccGGCCgcgacgaugGCCAcgcCGGGCUACc -3' miRNA: 3'- -AGGGGuCU-----CCGG---------UGGUuu-GUCCGAUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 40737 | 0.66 | 0.848285 |
Target: 5'- gUCCUCGGccGCCGCCAGuCGcGGCgagACa -3' miRNA: 3'- -AGGGGUCucCGGUGGUUuGU-CCGa--UG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 159763 | 0.66 | 0.848285 |
Target: 5'- gUCCUCGGccGCCGCCAGuCGcGGCgagACa -3' miRNA: 3'- -AGGGGUCucCGGUGGUUuGU-CCGa--UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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