Results 41 - 60 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24401 | 5' | -56.9 | NC_005264.1 | + | 31892 | 0.68 | 0.778819 |
Target: 5'- aCCCCAGcGGCgACCGugggaaaaucuGCGGGCa-- -3' miRNA: 3'- aGGGGUCuCCGgUGGUu----------UGUCCGaug -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 150918 | 0.68 | 0.778819 |
Target: 5'- aCCCCAGcGGCgACCGugggaaaaucuGCGGGCa-- -3' miRNA: 3'- aGGGGUCuCCGgUGGUu----------UGUCCGaug -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 88789 | 0.68 | 0.778819 |
Target: 5'- uUCCCUucgaGGGCCACCAacAACccuuGGGCgUGCa -3' miRNA: 3'- -AGGGGuc--UCCGGUGGU--UUG----UCCG-AUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 146947 | 0.68 | 0.768508 |
Target: 5'- -gCgCAGAGGCUggauggcgcugagGCC--GCAGGCUGCg -3' miRNA: 3'- agGgGUCUCCGG-------------UGGuuUGUCCGAUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 31349 | 0.68 | 0.760915 |
Target: 5'- cCCCCAGGugcucgggcacgcuuGCCguauccauucACCAAACAGGUUGCu -3' miRNA: 3'- aGGGGUCUc--------------CGG----------UGGUUUGUCCGAUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 125753 | 0.68 | 0.759961 |
Target: 5'- gUCCCCGGAacuGCCGCCGcgucgcuagaAACAGcCUGCc -3' miRNA: 3'- -AGGGGUCUc--CGGUGGU----------UUGUCcGAUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 126280 | 0.68 | 0.759961 |
Target: 5'- gUCCgCGGAGGCgGCCAugccgcuuuCGGGCg-- -3' miRNA: 3'- -AGGgGUCUCCGgUGGUuu-------GUCCGaug -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 102682 | 0.68 | 0.750356 |
Target: 5'- gCUgaCAGAGGCCGCgCAccgUAGGCUGCu -3' miRNA: 3'- aGGg-GUCUCCGGUG-GUuu-GUCCGAUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 112920 | 0.68 | 0.750356 |
Target: 5'- aUCCUCAGucGCCGCCA-GCGGGauuuggGCg -3' miRNA: 3'- -AGGGGUCucCGGUGGUuUGUCCga----UG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 87129 | 0.68 | 0.744543 |
Target: 5'- -gCCCGcGGGGCgCACCAgucuucgcgccgaaaGACGGcGCUGCg -3' miRNA: 3'- agGGGU-CUCCG-GUGGU---------------UUGUC-CGAUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 16964 | 0.69 | 0.730843 |
Target: 5'- aUCCCCacgagagcagaAGAGGCCGCCAuu--GGCc-- -3' miRNA: 3'- -AGGGG-----------UCUCCGGUGGUuuguCCGaug -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 62824 | 0.69 | 0.720954 |
Target: 5'- cCCCCGGAcGGCCACacuAUGGGuCUAa -3' miRNA: 3'- aGGGGUCU-CCGGUGguuUGUCC-GAUg -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 104885 | 0.69 | 0.710987 |
Target: 5'- cUUUCCGGgaacAGGCCucagGCCGAACAGGCg-- -3' miRNA: 3'- -AGGGGUC----UCCGG----UGGUUUGUCCGaug -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 134929 | 0.69 | 0.709987 |
Target: 5'- gUCCCCAGGagcucGGCCgaucugcacgaaaGCCAAcGCGGGCaGCc -3' miRNA: 3'- -AGGGGUCU-----CCGG-------------UGGUU-UGUCCGaUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 24035 | 0.69 | 0.700954 |
Target: 5'- -aCCCGGAGGUCGCCGuugccuguuaGAUAG-CUGCu -3' miRNA: 3'- agGGGUCUCCGGUGGU----------UUGUCcGAUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 125612 | 0.69 | 0.680722 |
Target: 5'- cCCCCAGGGGCCG----ACAGGUcaacgGCg -3' miRNA: 3'- aGGGGUCUCCGGUgguuUGUCCGa----UG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 158104 | 0.69 | 0.680722 |
Target: 5'- cCCCCGGAcGCCgGCUcgGCGGGCaGCg -3' miRNA: 3'- aGGGGUCUcCGG-UGGuuUGUCCGaUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 107683 | 0.69 | 0.680722 |
Target: 5'- -gCCCAGAGGCCGCau-AC--GCUGCg -3' miRNA: 3'- agGGGUCUCCGGUGguuUGucCGAUG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 6585 | 0.69 | 0.680722 |
Target: 5'- cCCCCAGGGGCCG----ACAGGUcaacgGCg -3' miRNA: 3'- aGGGGUCUCCGGUgguuUGUCCGa----UG- -5' |
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24401 | 5' | -56.9 | NC_005264.1 | + | 39077 | 0.69 | 0.680722 |
Target: 5'- cCCCCGGAcGCCgGCUcgGCGGGCaGCg -3' miRNA: 3'- aGGGGUCUcCGG-UGGuuUGUCCGaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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