miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24401 5' -56.9 NC_005264.1 + 132 0.72 0.558275
Target:  5'- cUCCCCGGcGGCCGCCuuAACGccGGCg-- -3'
miRNA:   3'- -AGGGGUCuCCGGUGGu-UUGU--CCGaug -5'
24401 5' -56.9 NC_005264.1 + 2599 0.67 0.79715
Target:  5'- gUCUCCAaaggaGaAGGCgcgaGCCGAGCAGGCgggGCg -3'
miRNA:   3'- -AGGGGU-----C-UCCGg---UGGUUUGUCCGa--UG- -5'
24401 5' -56.9 NC_005264.1 + 2810 0.67 0.823503
Target:  5'- gCCUgGGAGcCCACCuAAACGGGUUGg -3'
miRNA:   3'- aGGGgUCUCcGGUGG-UUUGUCCGAUg -5'
24401 5' -56.9 NC_005264.1 + 3612 0.68 0.788055
Target:  5'- gCCgCgGGGGGCCGCgaGGGCGGGCg-- -3'
miRNA:   3'- aGG-GgUCUCCGGUGg-UUUGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 5397 0.66 0.863834
Target:  5'- cUUgCCAGGGGCCAgCA---GGGCgUACg -3'
miRNA:   3'- -AGgGGUCUCCGGUgGUuugUCCG-AUG- -5'
24401 5' -56.9 NC_005264.1 + 6585 0.69 0.680722
Target:  5'- cCCCCAGGGGCCG----ACAGGUcaacgGCg -3'
miRNA:   3'- aGGGGUCUCCGGUgguuUGUCCGa----UG- -5'
24401 5' -56.9 NC_005264.1 + 12640 0.7 0.670541
Target:  5'- aCCgC-GAGGCCGCCAAuguGGCUAUu -3'
miRNA:   3'- aGGgGuCUCCGGUGGUUuguCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 13308 0.71 0.598865
Target:  5'- cUCCCCGGAGGaCgGCCGcGCGGaGCa-- -3'
miRNA:   3'- -AGGGGUCUCC-GgUGGUuUGUC-CGaug -5'
24401 5' -56.9 NC_005264.1 + 16964 0.69 0.730843
Target:  5'- aUCCCCacgagagcagaAGAGGCCGCCAuu--GGCc-- -3'
miRNA:   3'- -AGGGG-----------UCUCCGGUGGUuuguCCGaug -5'
24401 5' -56.9 NC_005264.1 + 17273 0.66 0.871298
Target:  5'- gUCaaCGGAGGCgACgGGGCggaGGGCUGCc -3'
miRNA:   3'- -AGggGUCUCCGgUGgUUUG---UCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 24035 0.69 0.700954
Target:  5'- -aCCCGGAGGUCGCCGuugccuguuaGAUAG-CUGCu -3'
miRNA:   3'- agGGGUCUCCGGUGGU----------UUGUCcGAUG- -5'
24401 5' -56.9 NC_005264.1 + 27774 0.66 0.856161
Target:  5'- uUCCCaCGGAuGGCCGCCGAcCAG-CUc- -3'
miRNA:   3'- -AGGG-GUCU-CCGGUGGUUuGUCcGAug -5'
24401 5' -56.9 NC_005264.1 + 29429 0.77 0.291277
Target:  5'- gUCCgCGuaggcuuuGGGGCCACC-AACGGGCUGCg -3'
miRNA:   3'- -AGGgGU--------CUCCGGUGGuUUGUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 31349 0.68 0.760915
Target:  5'- cCCCCAGGugcucgggcacgcuuGCCguauccauucACCAAACAGGUUGCu -3'
miRNA:   3'- aGGGGUCUc--------------CGG----------UGGUUUGUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 31892 0.68 0.778819
Target:  5'- aCCCCAGcGGCgACCGugggaaaaucuGCGGGCa-- -3'
miRNA:   3'- aGGGGUCuCCGgUGGUu----------UGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 36147 0.67 0.814883
Target:  5'- gCCCaUGGAGGCCGagcccuCCGAgccgGCAGGCgGCg -3'
miRNA:   3'- aGGG-GUCUCCGGU------GGUU----UGUCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 38740 0.7 0.669521
Target:  5'- cUCCCCGGAcgggcuGGCCGCCuuGCgaccccugccagaAGGgUACg -3'
miRNA:   3'- -AGGGGUCU------CCGGUGGuuUG-------------UCCgAUG- -5'
24401 5' -56.9 NC_005264.1 + 39077 0.69 0.680722
Target:  5'- cCCCCGGAcGCCgGCUcgGCGGGCaGCg -3'
miRNA:   3'- aGGGGUCUcCGG-UGGuuUGUCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 39579 0.73 0.479898
Target:  5'- -gCCCAGAGaGuaugcugcccCCGCCAGACGGaGCUGCg -3'
miRNA:   3'- agGGGUCUC-C----------GGUGGUUUGUC-CGAUG- -5'
24401 5' -56.9 NC_005264.1 + 39940 0.72 0.54824
Target:  5'- aCCCCGGgugGGGCCACgGcGACcucGGCUGCg -3'
miRNA:   3'- aGGGGUC---UCCGGUGgU-UUGu--CCGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.