miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24401 5' -56.9 NC_005264.1 + 104885 0.69 0.710987
Target:  5'- cUUUCCGGgaacAGGCCucagGCCGAACAGGCg-- -3'
miRNA:   3'- -AGGGGUC----UCCGG----UGGUUUGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 106765 0.74 0.442753
Target:  5'- uUCCCUcguccuacggcuAGAGGCgucUACaCAGACGGGCUGCu -3'
miRNA:   3'- -AGGGG------------UCUCCG---GUG-GUUUGUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 107188 0.68 0.788055
Target:  5'- --aCCGG-GGCCGCCAAAacuaaAGGCgGCg -3'
miRNA:   3'- aggGGUCuCCGGUGGUUUg----UCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 107683 0.69 0.680722
Target:  5'- -gCCCAGAGGCCGCau-AC--GCUGCg -3'
miRNA:   3'- agGGGUCUCCGGUGguuUGucCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 111749 0.66 0.878545
Target:  5'- aCCgCAGcaccGGCgACCGcgaAGCAGGCUAg -3'
miRNA:   3'- aGGgGUCu---CCGgUGGU---UUGUCCGAUg -5'
24401 5' -56.9 NC_005264.1 + 112594 1.09 0.002213
Target:  5'- gUCCCCAGAGGCCACCAAACAGGCUACc -3'
miRNA:   3'- -AGGGGUCUCCGGUGGUUUGUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 112920 0.68 0.750356
Target:  5'- aUCCUCAGucGCCGCCA-GCGGGauuuggGCg -3'
miRNA:   3'- -AGGGGUCucCGGUGGUuUGUCCga----UG- -5'
24401 5' -56.9 NC_005264.1 + 114437 0.66 0.856161
Target:  5'- cCCCCAcccgcuccuGGCCGCCGcccGACGccccagucuaccGGCUGCg -3'
miRNA:   3'- aGGGGUcu-------CCGGUGGU---UUGU------------CCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 115915 0.67 0.806095
Target:  5'- gUCCCCGuagcaguccuuGAGaGCCGCgAAcacgcggcGCAGGCUAg -3'
miRNA:   3'- -AGGGGU-----------CUC-CGGUGgUU--------UGUCCGAUg -5'
24401 5' -56.9 NC_005264.1 + 117952 0.75 0.373653
Target:  5'- cCCCCAGAcgacgacgGGcCCGCCucccCAGGCUGCa -3'
miRNA:   3'- aGGGGUCU--------CC-GGUGGuuu-GUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 119159 0.72 0.558275
Target:  5'- cUCCCCGGcGGCCGCCuuAACGccGGCg-- -3'
miRNA:   3'- -AGGGGUCuCCGGUGGu-UUGU--CCGaug -5'
24401 5' -56.9 NC_005264.1 + 121626 0.67 0.79715
Target:  5'- gUCUCCAaaggaGaAGGCgcgaGCCGAGCAGGCgggGCg -3'
miRNA:   3'- -AGGGGU-----C-UCCGg---UGGUUUGUCCGa--UG- -5'
24401 5' -56.9 NC_005264.1 + 121836 0.67 0.823503
Target:  5'- gCCUgGGAGcCCACCuAAACGGGUUGg -3'
miRNA:   3'- aGGGgUCUCcGGUGG-UUUGUCCGAUg -5'
24401 5' -56.9 NC_005264.1 + 122639 0.68 0.788055
Target:  5'- gCCgCgGGGGGCCGCgaGGGCGGGCg-- -3'
miRNA:   3'- aGG-GgUCUCCGGUGg-UUUGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 124424 0.66 0.863834
Target:  5'- cUUgCCAGGGGCCAgCA---GGGCgUACg -3'
miRNA:   3'- -AGgGGUCUCCGGUgGUuugUCCG-AUG- -5'
24401 5' -56.9 NC_005264.1 + 124751 0.68 0.788055
Target:  5'- uUCCCgGGGGGCCAaggAAGCAcGGCggguagGCa -3'
miRNA:   3'- -AGGGgUCUCCGGUgg-UUUGU-CCGa-----UG- -5'
24401 5' -56.9 NC_005264.1 + 125612 0.69 0.680722
Target:  5'- cCCCCAGGGGCCG----ACAGGUcaacgGCg -3'
miRNA:   3'- aGGGGUCUCCGGUgguuUGUCCGa----UG- -5'
24401 5' -56.9 NC_005264.1 + 125753 0.68 0.759961
Target:  5'- gUCCCCGGAacuGCCGCCGcgucgcuagaAACAGcCUGCc -3'
miRNA:   3'- -AGGGGUCUc--CGGUGGU----------UUGUCcGAUG- -5'
24401 5' -56.9 NC_005264.1 + 126092 0.68 0.788055
Target:  5'- aUCUCAGucuGGCCAgUAGGCGGGCa-- -3'
miRNA:   3'- aGGGGUCu--CCGGUgGUUUGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 126280 0.68 0.759961
Target:  5'- gUCCgCGGAGGCgGCCAugccgcuuuCGGGCg-- -3'
miRNA:   3'- -AGGgGUCUCCGgUGGUuu-------GUCCGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.