miRNA display CGI


Results 61 - 80 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24401 5' -56.9 NC_005264.1 + 130638 0.66 0.874223
Target:  5'- --gUCGGAGGCCACCAgugcacacuugggggAGgGGGaCUACu -3'
miRNA:   3'- aggGGUCUCCGGUGGU---------------UUgUCC-GAUG- -5'
24401 5' -56.9 NC_005264.1 + 132335 0.71 0.598865
Target:  5'- cUCCCCGGAGGaCgGCCGcGCGGaGCa-- -3'
miRNA:   3'- -AGGGGUCUCC-GgUGGUuUGUC-CGaug -5'
24401 5' -56.9 NC_005264.1 + 134929 0.69 0.709987
Target:  5'- gUCCCCAGGagcucGGCCgaucugcacgaaaGCCAAcGCGGGCaGCc -3'
miRNA:   3'- -AGGGGUCU-----CCGG-------------UGGUU-UGUCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 138775 0.66 0.881383
Target:  5'- gUCCCCAGAuucagauuauagcaGCUAUCuAACAGGCaACg -3'
miRNA:   3'- -AGGGGUCUc-------------CGGUGGuUUGUCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 141436 0.72 0.555259
Target:  5'- aCCUCGGAGGCCACCcucuccaucgaggcGAGC-GGCgggGCc -3'
miRNA:   3'- aGGGGUCUCCGGUGG--------------UUUGuCCGa--UG- -5'
24401 5' -56.9 NC_005264.1 + 142589 0.66 0.840212
Target:  5'- gUCCCCuGAaugccGGCCgcgacgaugGCCAcgcCGGGCUACc -3'
miRNA:   3'- -AGGGGuCU-----CCGG---------UGGUuu-GUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 143530 0.66 0.863834
Target:  5'- uUUCCUGGGGGCCugUgu-CcGGCUGCc -3'
miRNA:   3'- -AGGGGUCUCCGGugGuuuGuCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 146361 0.75 0.357558
Target:  5'- aCCCCGcAGGCCACC--GC-GGCUGCg -3'
miRNA:   3'- aGGGGUcUCCGGUGGuuUGuCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 146501 0.66 0.856161
Target:  5'- gUCUCCcuGGGCCGCgCGGuucCAGaGCUACg -3'
miRNA:   3'- -AGGGGucUCCGGUG-GUUu--GUC-CGAUG- -5'
24401 5' -56.9 NC_005264.1 + 146947 0.68 0.768508
Target:  5'- -gCgCAGAGGCUggauggcgcugagGCC--GCAGGCUGCg -3'
miRNA:   3'- agGgGUCUCCGG-------------UGGuuUGUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 147551 0.66 0.878545
Target:  5'- uUCCCgCGGcgcgaaguGGCCGCCGacgugugcGACGGGgaACg -3'
miRNA:   3'- -AGGG-GUCu-------CCGGUGGU--------UUGUCCgaUG- -5'
24401 5' -56.9 NC_005264.1 + 148405 0.66 0.878545
Target:  5'- -gCCUauuggggagGGcAGGCCGCCAuACGGGCgugggACg -3'
miRNA:   3'- agGGG---------UC-UCCGGUGGUuUGUCCGa----UG- -5'
24401 5' -56.9 NC_005264.1 + 150918 0.68 0.778819
Target:  5'- aCCCCAGcGGCgACCGugggaaaaucuGCGGGCa-- -3'
miRNA:   3'- aGGGGUCuCCGgUGGUu----------UGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 155174 0.67 0.814883
Target:  5'- gCCCaUGGAGGCCGagcccuCCGAgccgGCAGGCgGCg -3'
miRNA:   3'- aGGG-GUCUCCGGU------GGUU----UGUCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 157766 0.7 0.669521
Target:  5'- cUCCCCGGAcgggcuGGCCGCCuuGCgaccccugccagaAGGgUACg -3'
miRNA:   3'- -AGGGGUCU------CCGGUGGuuUG-------------UCCgAUG- -5'
24401 5' -56.9 NC_005264.1 + 158104 0.69 0.680722
Target:  5'- cCCCCGGAcGCCgGCUcgGCGGGCaGCg -3'
miRNA:   3'- aGGGGUCUcCGG-UGGuuUGUCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 158545 0.66 0.871298
Target:  5'- aCUCCAGGgccgcucuuacuGGCCAgCCAuGCAGGCc-- -3'
miRNA:   3'- aGGGGUCU------------CCGGU-GGUuUGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 158967 0.72 0.54824
Target:  5'- aCCCCGGgugGGGCCACgGcGACcucGGCUGCg -3'
miRNA:   3'- aGGGGUC---UCCGGUGgU-UUGu--CCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 159763 0.66 0.848285
Target:  5'- gUCCUCGGccGCCGCCAGuCGcGGCgagACa -3'
miRNA:   3'- -AGGGGUCucCGGUGGUUuGU-CCGa--UG- -5'
24401 5' -56.9 NC_005264.1 + 159833 0.67 0.79715
Target:  5'- aCCCCAGAGccgaGCCGCCGGcccaguCGGcGCUcGCa -3'
miRNA:   3'- aGGGGUCUC----CGGUGGUUu-----GUC-CGA-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.