miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24401 5' -56.9 NC_005264.1 + 104838 0.67 0.814883
Target:  5'- gUCCgCCGG-GGCCGCUGAGCcacGGCcGCc -3'
miRNA:   3'- -AGG-GGUCuCCGGUGGUUUGu--CCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 102682 0.68 0.750356
Target:  5'- gCUgaCAGAGGCCGCgCAccgUAGGCUGCu -3'
miRNA:   3'- aGGg-GUCUCCGGUG-GUuu-GUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 101224 0.66 0.856161
Target:  5'- cCCCCAGuauGCCGgCGgcGACGGGCUu- -3'
miRNA:   3'- aGGGGUCuc-CGGUgGU--UUGUCCGAug -5'
24401 5' -56.9 NC_005264.1 + 96641 0.68 0.788055
Target:  5'- gCCgCGGAGGCgCACCGcccgccgauGCGGGCggUGCg -3'
miRNA:   3'- aGGgGUCUCCG-GUGGUu--------UGUCCG--AUG- -5'
24401 5' -56.9 NC_005264.1 + 88789 0.68 0.778819
Target:  5'- uUCCCUucgaGGGCCACCAacAACccuuGGGCgUGCa -3'
miRNA:   3'- -AGGGGuc--UCCGGUGGU--UUG----UCCG-AUG- -5'
24401 5' -56.9 NC_005264.1 + 87129 0.68 0.744543
Target:  5'- -gCCCGcGGGGCgCACCAgucuucgcgccgaaaGACGGcGCUGCg -3'
miRNA:   3'- agGGGU-CUCCG-GUGGU---------------UUGUC-CGAUG- -5'
24401 5' -56.9 NC_005264.1 + 75310 0.7 0.650093
Target:  5'- cUCCUCGGAGGCCG-CGGGC-GGCUc- -3'
miRNA:   3'- -AGGGGUCUCCGGUgGUUUGuCCGAug -5'
24401 5' -56.9 NC_005264.1 + 74821 0.66 0.878545
Target:  5'- gCCCCgaGGAacguGGgCACCAGggGCAGGCUu- -3'
miRNA:   3'- aGGGG--UCU----CCgGUGGUU--UGUCCGAug -5'
24401 5' -56.9 NC_005264.1 + 72892 0.66 0.871298
Target:  5'- gCgCCAGcGGCCGCCG-AUGGGCg-- -3'
miRNA:   3'- aGgGGUCuCCGGUGGUuUGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 69048 0.66 0.848285
Target:  5'- cUCUuuGGccgcGGCCGCCGGGCAGGUc-- -3'
miRNA:   3'- -AGGggUCu---CCGGUGGUUUGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 63721 0.74 0.442753
Target:  5'- -aCCCAGAGGCgucuauccacgcCACCAGAC-GGCUAa -3'
miRNA:   3'- agGGGUCUCCG------------GUGGUUUGuCCGAUg -5'
24401 5' -56.9 NC_005264.1 + 62824 0.69 0.720954
Target:  5'- cCCCCGGAcGGCCACacuAUGGGuCUAa -3'
miRNA:   3'- aGGGGUCU-CCGGUGguuUGUCC-GAUg -5'
24401 5' -56.9 NC_005264.1 + 60699 0.66 0.871298
Target:  5'- cUCCgCAGAGGUCAgCAggUuguuGGCcGCg -3'
miRNA:   3'- -AGGgGUCUCCGGUgGUuuGu---CCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 56744 0.66 0.874223
Target:  5'- uUCCgCGGAGGCCgagauuggcacgcacGCCAAGCAaGGaaACc -3'
miRNA:   3'- -AGGgGUCUCCGG---------------UGGUUUGU-CCgaUG- -5'
24401 5' -56.9 NC_005264.1 + 56352 0.66 0.848285
Target:  5'- cCCCCAaacauGGUCACCaAAGCGGGUUuCa -3'
miRNA:   3'- aGGGGUcu---CCGGUGG-UUUGUCCGAuG- -5'
24401 5' -56.9 NC_005264.1 + 53318 0.67 0.823503
Target:  5'- -gCCCAGGGGCUGCUuggccAGCAGGg-GCa -3'
miRNA:   3'- agGGGUCUCCGGUGGu----UUGUCCgaUG- -5'
24401 5' -56.9 NC_005264.1 + 52329 0.75 0.398701
Target:  5'- gCUUCAG-GGUCGCUggGCGGGCUGCc -3'
miRNA:   3'- aGGGGUCuCCGGUGGuuUGUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 45125 0.7 0.670541
Target:  5'- gUCCgCguGGGGCgaagaACCAGACAGGCgccACg -3'
miRNA:   3'- -AGG-GguCUCCGg----UGGUUUGUCCGa--UG- -5'
24401 5' -56.9 NC_005264.1 + 43206 0.66 0.839394
Target:  5'- gCCgUAGAGGCUgagcccuACCAGugaauGCAGGCgGCa -3'
miRNA:   3'- aGGgGUCUCCGG-------UGGUU-----UGUCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 40737 0.66 0.848285
Target:  5'- gUCCUCGGccGCCGCCAGuCGcGGCgagACa -3'
miRNA:   3'- -AGGGGUCucCGGUGGUUuGU-CCGa--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.