miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24401 5' -56.9 NC_005264.1 + 122639 0.68 0.788055
Target:  5'- gCCgCgGGGGGCCGCgaGGGCGGGCg-- -3'
miRNA:   3'- aGG-GgUCUCCGGUGg-UUUGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 125612 0.69 0.680722
Target:  5'- cCCCCAGGGGCCG----ACAGGUcaacgGCg -3'
miRNA:   3'- aGGGGUCUCCGGUgguuUGUCCGa----UG- -5'
24401 5' -56.9 NC_005264.1 + 158104 0.69 0.680722
Target:  5'- cCCCCGGAcGCCgGCUcgGCGGGCaGCg -3'
miRNA:   3'- aGGGGUCUcCGG-UGGuuUGUCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 134929 0.69 0.709987
Target:  5'- gUCCCCAGGagcucGGCCgaucugcacgaaaGCCAAcGCGGGCaGCc -3'
miRNA:   3'- -AGGGGUCU-----CCGG-------------UGGUU-UGUCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 104885 0.69 0.710987
Target:  5'- cUUUCCGGgaacAGGCCucagGCCGAACAGGCg-- -3'
miRNA:   3'- -AGGGGUC----UCCGG----UGGUUUGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 102682 0.68 0.750356
Target:  5'- gCUgaCAGAGGCCGCgCAccgUAGGCUGCu -3'
miRNA:   3'- aGGg-GUCUCCGGUG-GUuu-GUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 31349 0.68 0.760915
Target:  5'- cCCCCAGGugcucgggcacgcuuGCCguauccauucACCAAACAGGUUGCu -3'
miRNA:   3'- aGGGGUCUc--------------CGG----------UGGUUUGUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 88789 0.68 0.778819
Target:  5'- uUCCCUucgaGGGCCACCAacAACccuuGGGCgUGCa -3'
miRNA:   3'- -AGGGGuc--UCCGGUGGU--UUG----UCCG-AUG- -5'
24401 5' -56.9 NC_005264.1 + 150918 0.68 0.778819
Target:  5'- aCCCCAGcGGCgACCGugggaaaaucuGCGGGCa-- -3'
miRNA:   3'- aGGGGUCuCCGgUGGUu----------UGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 12640 0.7 0.670541
Target:  5'- aCCgC-GAGGCCGCCAAuguGGCUAUu -3'
miRNA:   3'- aGGgGuCUCCGGUGGUUuguCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 157766 0.7 0.669521
Target:  5'- cUCCCCGGAcgggcuGGCCGCCuuGCgaccccugccagaAGGgUACg -3'
miRNA:   3'- -AGGGGUCU------CCGGUGGuuUG-------------UCCgAUG- -5'
24401 5' -56.9 NC_005264.1 + 75310 0.7 0.650093
Target:  5'- cUCCUCGGAGGCCG-CGGGC-GGCUc- -3'
miRNA:   3'- -AGGGGUCUCCGGUgGUUUGuCCGAug -5'
24401 5' -56.9 NC_005264.1 + 146361 0.75 0.357558
Target:  5'- aCCCCGcAGGCCACC--GC-GGCUGCg -3'
miRNA:   3'- aGGGGUcUCCGGUGGuuUGuCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 117952 0.75 0.373653
Target:  5'- cCCCCAGAcgacgacgGGcCCGCCucccCAGGCUGCa -3'
miRNA:   3'- aGGGGUCU--------CC-GGUGGuuu-GUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 52329 0.75 0.398701
Target:  5'- gCUUCAG-GGUCGCUggGCGGGCUGCc -3'
miRNA:   3'- aGGGGUCuCCGGUGGuuUGUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 106765 0.74 0.442753
Target:  5'- uUCCCUcguccuacggcuAGAGGCgucUACaCAGACGGGCUGCu -3'
miRNA:   3'- -AGGGG------------UCUCCG---GUG-GUUUGUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 39579 0.73 0.479898
Target:  5'- -gCCCAGAGaGuaugcugcccCCGCCAGACGGaGCUGCg -3'
miRNA:   3'- agGGGUCUC-C----------GGUGGUUUGUC-CGAUG- -5'
24401 5' -56.9 NC_005264.1 + 158967 0.72 0.54824
Target:  5'- aCCCCGGgugGGGCCACgGcGACcucGGCUGCg -3'
miRNA:   3'- aGGGGUC---UCCGGUGgU-UUGu--CCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 119159 0.72 0.558275
Target:  5'- cUCCCCGGcGGCCGCCuuAACGccGGCg-- -3'
miRNA:   3'- -AGGGGUCuCCGGUGGu-UUGU--CCGaug -5'
24401 5' -56.9 NC_005264.1 + 132335 0.71 0.598865
Target:  5'- cUCCCCGGAGGaCgGCCGcGCGGaGCa-- -3'
miRNA:   3'- -AGGGGUCUCC-GgUGGUuUGUC-CGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.