miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24401 5' -56.9 NC_005264.1 + 146947 0.68 0.768508
Target:  5'- -gCgCAGAGGCUggauggcgcugagGCC--GCAGGCUGCg -3'
miRNA:   3'- agGgGUCUCCGG-------------UGGuuUGUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 31892 0.68 0.778819
Target:  5'- aCCCCAGcGGCgACCGugggaaaaucuGCGGGCa-- -3'
miRNA:   3'- aGGGGUCuCCGgUGGUu----------UGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 2810 0.67 0.823503
Target:  5'- gCCUgGGAGcCCACCuAAACGGGUUGg -3'
miRNA:   3'- aGGGgUCUCcGGUGG-UUUGUCCGAUg -5'
24401 5' -56.9 NC_005264.1 + 72892 0.66 0.871298
Target:  5'- gCgCCAGcGGCCGCCG-AUGGGCg-- -3'
miRNA:   3'- aGgGGUCuCCGGUGGUuUGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 38740 0.7 0.669521
Target:  5'- cUCCCCGGAcgggcuGGCCGCCuuGCgaccccugccagaAGGgUACg -3'
miRNA:   3'- -AGGGGUCU------CCGGUGGuuUG-------------UCCgAUG- -5'
24401 5' -56.9 NC_005264.1 + 16964 0.69 0.730843
Target:  5'- aUCCCCacgagagcagaAGAGGCCGCCAuu--GGCc-- -3'
miRNA:   3'- -AGGGG-----------UCUCCGGUGGUuuguCCGaug -5'
24401 5' -56.9 NC_005264.1 + 96641 0.68 0.788055
Target:  5'- gCCgCGGAGGCgCACCGcccgccgauGCGGGCggUGCg -3'
miRNA:   3'- aGGgGUCUCCG-GUGGUu--------UGUCCG--AUG- -5'
24401 5' -56.9 NC_005264.1 + 158545 0.66 0.871298
Target:  5'- aCUCCAGGgccgcucuuacuGGCCAgCCAuGCAGGCc-- -3'
miRNA:   3'- aGGGGUCU------------CCGGU-GGUuUGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 87129 0.68 0.744543
Target:  5'- -gCCCGcGGGGCgCACCAgucuucgcgccgaaaGACGGcGCUGCg -3'
miRNA:   3'- agGGGU-CUCCG-GUGGU---------------UUGUC-CGAUG- -5'
24401 5' -56.9 NC_005264.1 + 56744 0.66 0.874223
Target:  5'- uUCCgCGGAGGCCgagauuggcacgcacGCCAAGCAaGGaaACc -3'
miRNA:   3'- -AGGgGUCUCCGG---------------UGGUUUGU-CCgaUG- -5'
24401 5' -56.9 NC_005264.1 + 3612 0.68 0.788055
Target:  5'- gCCgCgGGGGGCCGCgaGGGCGGGCg-- -3'
miRNA:   3'- aGG-GgUCUCCGGUGg-UUUGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 125753 0.68 0.759961
Target:  5'- gUCCCCGGAacuGCCGCCGcgucgcuagaAACAGcCUGCc -3'
miRNA:   3'- -AGGGGUCUc--CGGUGGU----------UUGUCcGAUG- -5'
24401 5' -56.9 NC_005264.1 + 2599 0.67 0.79715
Target:  5'- gUCUCCAaaggaGaAGGCgcgaGCCGAGCAGGCgggGCg -3'
miRNA:   3'- -AGGGGU-----C-UCCGg---UGGUUUGUCCGa--UG- -5'
24401 5' -56.9 NC_005264.1 + 104838 0.67 0.814883
Target:  5'- gUCCgCCGG-GGCCGCUGAGCcacGGCcGCc -3'
miRNA:   3'- -AGG-GGUCuCCGGUGGUUUGu--CCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 56352 0.66 0.848285
Target:  5'- cCCCCAaacauGGUCACCaAAGCGGGUUuCa -3'
miRNA:   3'- aGGGGUcu---CCGGUGG-UUUGUCCGAuG- -5'
24401 5' -56.9 NC_005264.1 + 5397 0.66 0.863834
Target:  5'- cUUgCCAGGGGCCAgCA---GGGCgUACg -3'
miRNA:   3'- -AGgGGUCUCCGGUgGUuugUCCG-AUG- -5'
24401 5' -56.9 NC_005264.1 + 39940 0.72 0.54824
Target:  5'- aCCCCGGgugGGGCCACgGcGACcucGGCUGCg -3'
miRNA:   3'- aGGGGUC---UCCGGUGgU-UUGu--CCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 13308 0.71 0.598865
Target:  5'- cUCCCCGGAGGaCgGCCGcGCGGaGCa-- -3'
miRNA:   3'- -AGGGGUCUCC-GgUGGUuUGUC-CGaug -5'
24401 5' -56.9 NC_005264.1 + 107683 0.69 0.680722
Target:  5'- -gCCCAGAGGCCGCau-AC--GCUGCg -3'
miRNA:   3'- agGGGUCUCCGGUGguuUGucCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 62824 0.69 0.720954
Target:  5'- cCCCCGGAcGGCCACacuAUGGGuCUAa -3'
miRNA:   3'- aGGGGUCU-CCGGUGguuUGUCC-GAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.