miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24401 5' -56.9 NC_005264.1 + 63721 0.74 0.442753
Target:  5'- -aCCCAGAGGCgucuauccacgcCACCAGAC-GGCUAa -3'
miRNA:   3'- agGGGUCUCCG------------GUGGUUUGuCCGAUg -5'
24401 5' -56.9 NC_005264.1 + 157766 0.7 0.669521
Target:  5'- cUCCCCGGAcgggcuGGCCGCCuuGCgaccccugccagaAGGgUACg -3'
miRNA:   3'- -AGGGGUCU------CCGGUGGuuUG-------------UCCgAUG- -5'
24401 5' -56.9 NC_005264.1 + 117952 0.75 0.373653
Target:  5'- cCCCCAGAcgacgacgGGcCCGCCucccCAGGCUGCa -3'
miRNA:   3'- aGGGGUCU--------CC-GGUGGuuu-GUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 101224 0.66 0.856161
Target:  5'- cCCCCAGuauGCCGgCGgcGACGGGCUu- -3'
miRNA:   3'- aGGGGUCuc-CGGUgGU--UUGUCCGAug -5'
24401 5' -56.9 NC_005264.1 + 39579 0.73 0.479898
Target:  5'- -gCCCAGAGaGuaugcugcccCCGCCAGACGGaGCUGCg -3'
miRNA:   3'- agGGGUCUC-C----------GGUGGUUUGUC-CGAUG- -5'
24401 5' -56.9 NC_005264.1 + 158967 0.72 0.54824
Target:  5'- aCCCCGGgugGGGCCACgGcGACcucGGCUGCg -3'
miRNA:   3'- aGGGGUC---UCCGGUGgU-UUGu--CCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 12640 0.7 0.670541
Target:  5'- aCCgC-GAGGCCGCCAAuguGGCUAUu -3'
miRNA:   3'- aGGgGuCUCCGGUGGUUuguCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 125612 0.69 0.680722
Target:  5'- cCCCCAGGGGCCG----ACAGGUcaacgGCg -3'
miRNA:   3'- aGGGGUCUCCGGUgguuUGUCCGa----UG- -5'
24401 5' -56.9 NC_005264.1 + 158104 0.69 0.680722
Target:  5'- cCCCCGGAcGCCgGCUcgGCGGGCaGCg -3'
miRNA:   3'- aGGGGUCUcCGG-UGGuuUGUCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 159763 0.66 0.848285
Target:  5'- gUCCUCGGccGCCGCCAGuCGcGGCgagACa -3'
miRNA:   3'- -AGGGGUCucCGGUGGUUuGU-CCGa--UG- -5'
24401 5' -56.9 NC_005264.1 + 142589 0.66 0.840212
Target:  5'- gUCCCCuGAaugccGGCCgcgacgaugGCCAcgcCGGGCUACc -3'
miRNA:   3'- -AGGGGuCU-----CCGG---------UGGUuu-GUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 43206 0.66 0.839394
Target:  5'- gCCgUAGAGGCUgagcccuACCAGugaauGCAGGCgGCa -3'
miRNA:   3'- aGGgGUCUCCGG-------UGGUU-----UGUCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 121836 0.67 0.823503
Target:  5'- gCCUgGGAGcCCACCuAAACGGGUUGg -3'
miRNA:   3'- aGGGgUCUCcGGUGG-UUUGUCCGAUg -5'
24401 5' -56.9 NC_005264.1 + 155174 0.67 0.814883
Target:  5'- gCCCaUGGAGGCCGagcccuCCGAgccgGCAGGCgGCg -3'
miRNA:   3'- aGGG-GUCUCCGGU------GGUU----UGUCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 121626 0.67 0.79715
Target:  5'- gUCUCCAaaggaGaAGGCgcgaGCCGAGCAGGCgggGCg -3'
miRNA:   3'- -AGGGGU-----C-UCCGg---UGGUUUGUCCGa--UG- -5'
24401 5' -56.9 NC_005264.1 + 115915 0.67 0.806095
Target:  5'- gUCCCCGuagcaguccuuGAGaGCCGCgAAcacgcggcGCAGGCUAg -3'
miRNA:   3'- -AGGGGU-----------CUC-CGGUGgUU--------UGUCCGAUg -5'
24401 5' -56.9 NC_005264.1 + 107188 0.68 0.788055
Target:  5'- --aCCGG-GGCCGCCAAAacuaaAGGCgGCg -3'
miRNA:   3'- aggGGUCuCCGGUGGUUUg----UCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 122639 0.68 0.788055
Target:  5'- gCCgCgGGGGGCCGCgaGGGCGGGCg-- -3'
miRNA:   3'- aGG-GgUCUCCGGUGg-UUUGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 150918 0.68 0.778819
Target:  5'- aCCCCAGcGGCgACCGugggaaaaucuGCGGGCa-- -3'
miRNA:   3'- aGGGGUCuCCGgUGGUu----------UGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 134929 0.69 0.709987
Target:  5'- gUCCCCAGGagcucGGCCgaucugcacgaaaGCCAAcGCGGGCaGCc -3'
miRNA:   3'- -AGGGGUCU-----CCGG-------------UGGUU-UGUCCGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.