miRNA display CGI


Results 61 - 80 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24401 5' -56.9 NC_005264.1 + 150918 0.68 0.778819
Target:  5'- aCCCCAGcGGCgACCGugggaaaaucuGCGGGCa-- -3'
miRNA:   3'- aGGGGUCuCCGgUGGUu----------UGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 27774 0.66 0.856161
Target:  5'- uUCCCaCGGAuGGCCGCCGAcCAG-CUc- -3'
miRNA:   3'- -AGGG-GUCU-CCGGUGGUUuGUCcGAug -5'
24401 5' -56.9 NC_005264.1 + 114437 0.66 0.856161
Target:  5'- cCCCCAcccgcuccuGGCCGCCGcccGACGccccagucuaccGGCUGCg -3'
miRNA:   3'- aGGGGUcu-------CCGGUGGU---UUGU------------CCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 146501 0.66 0.856161
Target:  5'- gUCUCCcuGGGCCGCgCGGuucCAGaGCUACg -3'
miRNA:   3'- -AGGGGucUCCGGUG-GUUu--GUC-CGAUG- -5'
24401 5' -56.9 NC_005264.1 + 124424 0.66 0.863834
Target:  5'- cUUgCCAGGGGCCAgCA---GGGCgUACg -3'
miRNA:   3'- -AGgGGUCUCCGGUgGUuugUCCG-AUG- -5'
24401 5' -56.9 NC_005264.1 + 17273 0.66 0.871298
Target:  5'- gUCaaCGGAGGCgACgGGGCggaGGGCUGCc -3'
miRNA:   3'- -AGggGUCUCCGgUGgUUUG---UCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 60699 0.66 0.871298
Target:  5'- cUCCgCAGAGGUCAgCAggUuguuGGCcGCg -3'
miRNA:   3'- -AGGgGUCUCCGGUgGUuuGu---CCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 147551 0.66 0.878545
Target:  5'- uUCCCgCGGcgcgaaguGGCCGCCGacgugugcGACGGGgaACg -3'
miRNA:   3'- -AGGG-GUCu-------CCGGUGGU--------UUGUCCgaUG- -5'
24401 5' -56.9 NC_005264.1 + 148405 0.66 0.878545
Target:  5'- -gCCUauuggggagGGcAGGCCGCCAuACGGGCgugggACg -3'
miRNA:   3'- agGGG---------UC-UCCGGUGGUuUGUCCGa----UG- -5'
24401 5' -56.9 NC_005264.1 + 159763 0.66 0.848285
Target:  5'- gUCCUCGGccGCCGCCAGuCGcGGCgagACa -3'
miRNA:   3'- -AGGGGUCucCGGUGGUUuGU-CCGa--UG- -5'
24401 5' -56.9 NC_005264.1 + 101224 0.66 0.856161
Target:  5'- cCCCCAGuauGCCGgCGgcGACGGGCUu- -3'
miRNA:   3'- aGGGGUCuc-CGGUgGU--UUGUCCGAug -5'
24401 5' -56.9 NC_005264.1 + 122639 0.68 0.788055
Target:  5'- gCCgCgGGGGGCCGCgaGGGCGGGCg-- -3'
miRNA:   3'- aGG-GgUCUCCGGUGg-UUUGUCCGaug -5'
24401 5' -56.9 NC_005264.1 + 107188 0.68 0.788055
Target:  5'- --aCCGG-GGCCGCCAAAacuaaAGGCgGCg -3'
miRNA:   3'- aggGGUCuCCGGUGGUUUg----UCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 121626 0.67 0.79715
Target:  5'- gUCUCCAaaggaGaAGGCgcgaGCCGAGCAGGCgggGCg -3'
miRNA:   3'- -AGGGGU-----C-UCCGg---UGGUUUGUCCGa--UG- -5'
24401 5' -56.9 NC_005264.1 + 115915 0.67 0.806095
Target:  5'- gUCCCCGuagcaguccuuGAGaGCCGCgAAcacgcggcGCAGGCUAg -3'
miRNA:   3'- -AGGGGU-----------CUC-CGGUGgUU--------UGUCCGAUg -5'
24401 5' -56.9 NC_005264.1 + 155174 0.67 0.814883
Target:  5'- gCCCaUGGAGGCCGagcccuCCGAgccgGCAGGCgGCg -3'
miRNA:   3'- aGGG-GUCUCCGGU------GGUU----UGUCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 121836 0.67 0.823503
Target:  5'- gCCUgGGAGcCCACCuAAACGGGUUGg -3'
miRNA:   3'- aGGGgUCUCcGGUGG-UUUGUCCGAUg -5'
24401 5' -56.9 NC_005264.1 + 43206 0.66 0.839394
Target:  5'- gCCgUAGAGGCUgagcccuACCAGugaauGCAGGCgGCa -3'
miRNA:   3'- aGGgGUCUCCGG-------UGGUU-----UGUCCGaUG- -5'
24401 5' -56.9 NC_005264.1 + 142589 0.66 0.840212
Target:  5'- gUCCCCuGAaugccGGCCgcgacgaugGCCAcgcCGGGCUACc -3'
miRNA:   3'- -AGGGGuCU-----CCGG---------UGGUuu-GUCCGAUG- -5'
24401 5' -56.9 NC_005264.1 + 138775 0.66 0.881383
Target:  5'- gUCCCCAGAuucagauuauagcaGCUAUCuAACAGGCaACg -3'
miRNA:   3'- -AGGGGUCUc-------------CGGUGGuUUGUCCGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.