miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24402 3' -61.5 NC_005264.1 + 96227 0.66 0.731675
Target:  5'- gGCCGCGacgGCGC---CgGCaACGCgGCGCa -3'
miRNA:   3'- -CGGCGCa--CGCGaagGgCG-UGCG-CGCG- -5'
24402 3' -61.5 NC_005264.1 + 146278 0.66 0.731675
Target:  5'- cGCCGCcccgGCGCcgCCCacCGCGCugaaauacGCGCa -3'
miRNA:   3'- -CGGCGca--CGCGaaGGGc-GUGCG--------CGCG- -5'
24402 3' -61.5 NC_005264.1 + 102990 0.66 0.731675
Target:  5'- aCCGUG-GCGg--CCUGCACcacguauuGCGCGCu -3'
miRNA:   3'- cGGCGCaCGCgaaGGGCGUG--------CGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 76078 0.66 0.731675
Target:  5'- cGCCGCGaGCGUcgaCgGCucuACGgGCGCg -3'
miRNA:   3'- -CGGCGCaCGCGaagGgCG---UGCgCGCG- -5'
24402 3' -61.5 NC_005264.1 + 41023 0.66 0.726045
Target:  5'- cGCCGCuGUGC-CUUCCaCGUGCcccuccuaacguauuGgGCGCc -3'
miRNA:   3'- -CGGCG-CACGcGAAGG-GCGUG---------------CgCGCG- -5'
24402 3' -61.5 NC_005264.1 + 130994 0.66 0.722277
Target:  5'- gGUCGCGcccaUGU-CUUgCCGCGCGCG-GCa -3'
miRNA:   3'- -CGGCGC----ACGcGAAgGGCGUGCGCgCG- -5'
24402 3' -61.5 NC_005264.1 + 89455 0.66 0.722277
Target:  5'- aGCCGCc-GCGCUaccauuUCgCCGCagacaaagaaAgGCGCGCu -3'
miRNA:   3'- -CGGCGcaCGCGA------AG-GGCG----------UgCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 52790 0.66 0.722277
Target:  5'- cUCGCGUacuGuCGCUUgCCGCGC-CGCuGCa -3'
miRNA:   3'- cGGCGCA---C-GCGAAgGGCGUGcGCG-CG- -5'
24402 3' -61.5 NC_005264.1 + 56147 0.66 0.722277
Target:  5'- uGUCGCGUugGcCGCuUUUUCGCACucCGCGCg -3'
miRNA:   3'- -CGGCGCA--C-GCG-AAGGGCGUGc-GCGCG- -5'
24402 3' -61.5 NC_005264.1 + 139819 0.66 0.721333
Target:  5'- cGUCGCGggacgaaaCGCguaCCCGCaaaaaaaACGCGCGUc -3'
miRNA:   3'- -CGGCGCac------GCGaa-GGGCG-------UGCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 84131 0.66 0.716604
Target:  5'- cUCGCG-GCaGCUcgcgagCCCcgggaaguggucgcaGCGCGCGCGCc -3'
miRNA:   3'- cGGCGCaCG-CGAa-----GGG---------------CGUGCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 85640 0.66 0.712809
Target:  5'- aGCCGCuaaugGcCGCgauggCCCGCGaGCGCGa -3'
miRNA:   3'- -CGGCGca---C-GCGaa---GGGCGUgCGCGCg -5'
24402 3' -61.5 NC_005264.1 + 146776 0.66 0.712809
Target:  5'- cGCCGCGcgGCGgUUCUCGgUGCG-GCGg -3'
miRNA:   3'- -CGGCGCa-CGCgAAGGGC-GUGCgCGCg -5'
24402 3' -61.5 NC_005264.1 + 16076 0.66 0.712809
Target:  5'- cGCCGCGcgGCGCUUgCUGUugccgggucCGC-CGCc -3'
miRNA:   3'- -CGGCGCa-CGCGAAgGGCGu--------GCGcGCG- -5'
24402 3' -61.5 NC_005264.1 + 48956 0.66 0.712809
Target:  5'- gGCCGC-UGCGC-UCCaagcaGUAgGCGCa- -3'
miRNA:   3'- -CGGCGcACGCGaAGGg----CGUgCGCGcg -5'
24402 3' -61.5 NC_005264.1 + 102840 0.66 0.712809
Target:  5'- gGCCGCGgccaCGCggccgUCUCGCuCGCG-GCc -3'
miRNA:   3'- -CGGCGCac--GCGa----AGGGCGuGCGCgCG- -5'
24402 3' -61.5 NC_005264.1 + 90822 0.66 0.712809
Target:  5'- cUCGCGUGUgGCggCCgCGCACGuCGaGCa -3'
miRNA:   3'- cGGCGCACG-CGaaGG-GCGUGC-GCgCG- -5'
24402 3' -61.5 NC_005264.1 + 44512 0.66 0.712809
Target:  5'- cCCGuCGUGUaCUcguaCCGCuacgACGCGCGCg -3'
miRNA:   3'- cGGC-GCACGcGAag--GGCG----UGCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 84585 0.66 0.712809
Target:  5'- uCCGC-UGUGC-UCCCGauacCGCGUGUa -3'
miRNA:   3'- cGGCGcACGCGaAGGGCgu--GCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 68234 0.66 0.712809
Target:  5'- cGCCGCac-CGCcaagccaugCCCGCGCcGCGgGCg -3'
miRNA:   3'- -CGGCGcacGCGaa-------GGGCGUG-CGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.