Results 1 - 20 of 231 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24402 | 3' | -61.5 | NC_005264.1 | + | 42433 | 0.66 | 0.703279 |
Target: 5'- uUCGCGUucgGCGCUg-CgGCACuCGCGCu -3' miRNA: 3'- cGGCGCA---CGCGAagGgCGUGcGCGCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 68234 | 0.66 | 0.712809 |
Target: 5'- cGCCGCac-CGCcaagccaugCCCGCGCcGCGgGCg -3' miRNA: 3'- -CGGCGcacGCGaa-------GGGCGUG-CGCgCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 85640 | 0.66 | 0.712809 |
Target: 5'- aGCCGCuaaugGcCGCgauggCCCGCGaGCGCGa -3' miRNA: 3'- -CGGCGca---C-GCGaa---GGGCGUgCGCGCg -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 811 | 0.66 | 0.678263 |
Target: 5'- gGCUGgGUGCGCggCCgGcuuuagccucugucuCugGCGUGCc -3' miRNA: 3'- -CGGCgCACGCGaaGGgC---------------GugCGCGCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 8218 | 0.66 | 0.703279 |
Target: 5'- cCCGCG-GcCGCUggUCCgaGUACGCcaGCGCg -3' miRNA: 3'- cGGCGCaC-GCGA--AGGg-CGUGCG--CGCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 8619 | 0.66 | 0.703279 |
Target: 5'- -aCGCGcaccgguagGCGCUUCaCCGCcACGUcuacguuucGCGCg -3' miRNA: 3'- cgGCGCa--------CGCGAAG-GGCG-UGCG---------CGCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 157186 | 0.66 | 0.684062 |
Target: 5'- aGCaUGCGUGCGacuaCCGC-CGCGCuGUg -3' miRNA: 3'- -CG-GCGCACGCgaagGGCGuGCGCG-CG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 142684 | 0.66 | 0.684062 |
Target: 5'- uGCCGCGaucuUGgGCg-CCgGCG-GCGCGCc -3' miRNA: 3'- -CGGCGC----ACgCGaaGGgCGUgCGCGCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 157620 | 0.66 | 0.703279 |
Target: 5'- gGCCGCGgaaGaagaGCUUCgccUCGC-CGCgGCGCg -3' miRNA: 3'- -CGGCGCa--Cg---CGAAG---GGCGuGCG-CGCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 87903 | 0.66 | 0.709956 |
Target: 5'- cGUCGCGUcccgauacuucuacGCGCUcCCCGUaaauggcuucuACGCGaauCGCa -3' miRNA: 3'- -CGGCGCA--------------CGCGAaGGGCG-----------UGCGC---GCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 81026 | 0.66 | 0.687919 |
Target: 5'- aGCCaGCG-GCGCcuaCCCGCcgucuacccucacugGCGCGUGg -3' miRNA: 3'- -CGG-CGCaCGCGaa-GGGCG---------------UGCGCGCg -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 144952 | 0.66 | 0.674391 |
Target: 5'- aGCUGCuGUGCGCgccguagaucagCCCGCcgauuGCucacgcggucgaacaGCGCGCg -3' miRNA: 3'- -CGGCG-CACGCGaa----------GGGCG-----UG---------------CGCGCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 146776 | 0.66 | 0.712809 |
Target: 5'- cGCCGCGcgGCGgUUCUCGgUGCG-GCGg -3' miRNA: 3'- -CGGCGCa-CGCgAAGGGC-GUGCgCGCg -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 1367 | 0.66 | 0.693694 |
Target: 5'- cGCCGaccuaGguacGaUGCaUCCUGCGCGCGuCGCa -3' miRNA: 3'- -CGGCg----Ca---C-GCGaAGGGCGUGCGC-GCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 103063 | 0.66 | 0.683096 |
Target: 5'- cCUGCGgGCGaCgagUCCCGCGaagcgucCGCGuCGCa -3' miRNA: 3'- cGGCGCaCGC-Ga--AGGGCGU-------GCGC-GCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 18415 | 0.66 | 0.693694 |
Target: 5'- gGCCgGCGcagGCGCgcccUCUCGCuCG-GCGCg -3' miRNA: 3'- -CGG-CGCa--CGCGa---AGGGCGuGCgCGCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 157078 | 0.66 | 0.684062 |
Target: 5'- gGUCGCGUGgGUcUCCCaGCuuuuuucuUGCGCGg -3' miRNA: 3'- -CGGCGCACgCGaAGGG-CGu-------GCGCGCg -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 84131 | 0.66 | 0.716604 |
Target: 5'- cUCGCG-GCaGCUcgcgagCCCcgggaaguggucgcaGCGCGCGCGCc -3' miRNA: 3'- cGGCGCaCG-CGAa-----GGG---------------CGUGCGCGCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 52790 | 0.66 | 0.722277 |
Target: 5'- cUCGCGUacuGuCGCUUgCCGCGC-CGCuGCa -3' miRNA: 3'- cGGCGCA---C-GCGAAgGGCGUGcGCG-CG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 151003 | 0.66 | 0.693694 |
Target: 5'- gGCCGCGUGU-----CCG-AUGCGCGCu -3' miRNA: 3'- -CGGCGCACGcgaagGGCgUGCGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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