miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24402 3' -61.5 NC_005264.1 + 42433 0.66 0.703279
Target:  5'- uUCGCGUucgGCGCUg-CgGCACuCGCGCu -3'
miRNA:   3'- cGGCGCA---CGCGAagGgCGUGcGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 68234 0.66 0.712809
Target:  5'- cGCCGCac-CGCcaagccaugCCCGCGCcGCGgGCg -3'
miRNA:   3'- -CGGCGcacGCGaa-------GGGCGUG-CGCgCG- -5'
24402 3' -61.5 NC_005264.1 + 85640 0.66 0.712809
Target:  5'- aGCCGCuaaugGcCGCgauggCCCGCGaGCGCGa -3'
miRNA:   3'- -CGGCGca---C-GCGaa---GGGCGUgCGCGCg -5'
24402 3' -61.5 NC_005264.1 + 811 0.66 0.678263
Target:  5'- gGCUGgGUGCGCggCCgGcuuuagccucugucuCugGCGUGCc -3'
miRNA:   3'- -CGGCgCACGCGaaGGgC---------------GugCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 8218 0.66 0.703279
Target:  5'- cCCGCG-GcCGCUggUCCgaGUACGCcaGCGCg -3'
miRNA:   3'- cGGCGCaC-GCGA--AGGg-CGUGCG--CGCG- -5'
24402 3' -61.5 NC_005264.1 + 8619 0.66 0.703279
Target:  5'- -aCGCGcaccgguagGCGCUUCaCCGCcACGUcuacguuucGCGCg -3'
miRNA:   3'- cgGCGCa--------CGCGAAG-GGCG-UGCG---------CGCG- -5'
24402 3' -61.5 NC_005264.1 + 157186 0.66 0.684062
Target:  5'- aGCaUGCGUGCGacuaCCGC-CGCGCuGUg -3'
miRNA:   3'- -CG-GCGCACGCgaagGGCGuGCGCG-CG- -5'
24402 3' -61.5 NC_005264.1 + 142684 0.66 0.684062
Target:  5'- uGCCGCGaucuUGgGCg-CCgGCG-GCGCGCc -3'
miRNA:   3'- -CGGCGC----ACgCGaaGGgCGUgCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 157620 0.66 0.703279
Target:  5'- gGCCGCGgaaGaagaGCUUCgccUCGC-CGCgGCGCg -3'
miRNA:   3'- -CGGCGCa--Cg---CGAAG---GGCGuGCG-CGCG- -5'
24402 3' -61.5 NC_005264.1 + 87903 0.66 0.709956
Target:  5'- cGUCGCGUcccgauacuucuacGCGCUcCCCGUaaauggcuucuACGCGaauCGCa -3'
miRNA:   3'- -CGGCGCA--------------CGCGAaGGGCG-----------UGCGC---GCG- -5'
24402 3' -61.5 NC_005264.1 + 81026 0.66 0.687919
Target:  5'- aGCCaGCG-GCGCcuaCCCGCcgucuacccucacugGCGCGUGg -3'
miRNA:   3'- -CGG-CGCaCGCGaa-GGGCG---------------UGCGCGCg -5'
24402 3' -61.5 NC_005264.1 + 144952 0.66 0.674391
Target:  5'- aGCUGCuGUGCGCgccguagaucagCCCGCcgauuGCucacgcggucgaacaGCGCGCg -3'
miRNA:   3'- -CGGCG-CACGCGaa----------GGGCG-----UG---------------CGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 146776 0.66 0.712809
Target:  5'- cGCCGCGcgGCGgUUCUCGgUGCG-GCGg -3'
miRNA:   3'- -CGGCGCa-CGCgAAGGGC-GUGCgCGCg -5'
24402 3' -61.5 NC_005264.1 + 1367 0.66 0.693694
Target:  5'- cGCCGaccuaGguacGaUGCaUCCUGCGCGCGuCGCa -3'
miRNA:   3'- -CGGCg----Ca---C-GCGaAGGGCGUGCGC-GCG- -5'
24402 3' -61.5 NC_005264.1 + 103063 0.66 0.683096
Target:  5'- cCUGCGgGCGaCgagUCCCGCGaagcgucCGCGuCGCa -3'
miRNA:   3'- cGGCGCaCGC-Ga--AGGGCGU-------GCGC-GCG- -5'
24402 3' -61.5 NC_005264.1 + 18415 0.66 0.693694
Target:  5'- gGCCgGCGcagGCGCgcccUCUCGCuCG-GCGCg -3'
miRNA:   3'- -CGG-CGCa--CGCGa---AGGGCGuGCgCGCG- -5'
24402 3' -61.5 NC_005264.1 + 157078 0.66 0.684062
Target:  5'- gGUCGCGUGgGUcUCCCaGCuuuuuucuUGCGCGg -3'
miRNA:   3'- -CGGCGCACgCGaAGGG-CGu-------GCGCGCg -5'
24402 3' -61.5 NC_005264.1 + 84131 0.66 0.716604
Target:  5'- cUCGCG-GCaGCUcgcgagCCCcgggaaguggucgcaGCGCGCGCGCc -3'
miRNA:   3'- cGGCGCaCG-CGAa-----GGG---------------CGUGCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 52790 0.66 0.722277
Target:  5'- cUCGCGUacuGuCGCUUgCCGCGC-CGCuGCa -3'
miRNA:   3'- cGGCGCA---C-GCGAAgGGCGUGcGCG-CG- -5'
24402 3' -61.5 NC_005264.1 + 151003 0.66 0.693694
Target:  5'- gGCCGCGUGU-----CCG-AUGCGCGCu -3'
miRNA:   3'- -CGGCGCACGcgaagGGCgUGCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.