miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24402 3' -61.5 NC_005264.1 + 157186 0.66 0.684062
Target:  5'- aGCaUGCGUGCGacuaCCGC-CGCGCuGUg -3'
miRNA:   3'- -CG-GCGCACGCgaagGGCGuGCGCG-CG- -5'
24402 3' -61.5 NC_005264.1 + 81026 0.66 0.687919
Target:  5'- aGCCaGCG-GCGCcuaCCCGCcgucuacccucacugGCGCGUGg -3'
miRNA:   3'- -CGG-CGCaCGCGaa-GGGCG---------------UGCGCGCg -5'
24402 3' -61.5 NC_005264.1 + 14715 0.66 0.712809
Target:  5'- uUUGCGUGUGUa-CgCGCACGUGuCGCg -3'
miRNA:   3'- cGGCGCACGCGaaGgGCGUGCGC-GCG- -5'
24402 3' -61.5 NC_005264.1 + 16076 0.66 0.712809
Target:  5'- cGCCGCGcgGCGCUUgCUGUugccgggucCGC-CGCc -3'
miRNA:   3'- -CGGCGCa-CGCGAAgGGCGu--------GCGcGCG- -5'
24402 3' -61.5 NC_005264.1 + 146776 0.66 0.712809
Target:  5'- cGCCGCGcgGCGgUUCUCGgUGCG-GCGg -3'
miRNA:   3'- -CGGCGCa-CGCgAAGGGC-GUGCgCGCg -5'
24402 3' -61.5 NC_005264.1 + 146278 0.66 0.731675
Target:  5'- cGCCGCcccgGCGCcgCCCacCGCGCugaaauacGCGCa -3'
miRNA:   3'- -CGGCGca--CGCGaaGGGc-GUGCG--------CGCG- -5'
24402 3' -61.5 NC_005264.1 + 102840 0.66 0.712809
Target:  5'- gGCCGCGgccaCGCggccgUCUCGCuCGCG-GCc -3'
miRNA:   3'- -CGGCGCac--GCGa----AGGGCGuGCGCgCG- -5'
24402 3' -61.5 NC_005264.1 + 44512 0.66 0.712809
Target:  5'- cCCGuCGUGUaCUcguaCCGCuacgACGCGCGCg -3'
miRNA:   3'- cGGC-GCACGcGAag--GGCG----UGCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 85640 0.66 0.712809
Target:  5'- aGCCGCuaaugGcCGCgauggCCCGCGaGCGCGa -3'
miRNA:   3'- -CGGCGca---C-GCGaa---GGGCGUgCGCGCg -5'
24402 3' -61.5 NC_005264.1 + 96227 0.66 0.731675
Target:  5'- gGCCGCGacgGCGC---CgGCaACGCgGCGCa -3'
miRNA:   3'- -CGGCGCa--CGCGaagGgCG-UGCG-CGCG- -5'
24402 3' -61.5 NC_005264.1 + 83232 0.66 0.707098
Target:  5'- -gCGCGUGgGCgUCUaggccgccgcugaugCGCugGCGCGg -3'
miRNA:   3'- cgGCGCACgCGaAGG---------------GCGugCGCGCg -5'
24402 3' -61.5 NC_005264.1 + 66474 0.66 0.707098
Target:  5'- cGCCGCG-GCcagacucaaugcuugGCgggCUGCGCGgCGCGCu -3'
miRNA:   3'- -CGGCGCaCG---------------CGaagGGCGUGC-GCGCG- -5'
24402 3' -61.5 NC_005264.1 + 18415 0.66 0.693694
Target:  5'- gGCCgGCGcagGCGCgcccUCUCGCuCG-GCGCg -3'
miRNA:   3'- -CGG-CGCa--CGCGa---AGGGCGuGCgCGCG- -5'
24402 3' -61.5 NC_005264.1 + 89455 0.66 0.722277
Target:  5'- aGCCGCc-GCGCUaccauuUCgCCGCagacaaagaaAgGCGCGCu -3'
miRNA:   3'- -CGGCGcaCGCGA------AG-GGCG----------UgCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 130994 0.66 0.722277
Target:  5'- gGUCGCGcccaUGU-CUUgCCGCGCGCG-GCa -3'
miRNA:   3'- -CGGCGC----ACGcGAAgGGCGUGCGCgCG- -5'
24402 3' -61.5 NC_005264.1 + 87903 0.66 0.709956
Target:  5'- cGUCGCGUcccgauacuucuacGCGCUcCCCGUaaauggcuucuACGCGaauCGCa -3'
miRNA:   3'- -CGGCGCA--------------CGCGAaGGGCG-----------UGCGC---GCG- -5'
24402 3' -61.5 NC_005264.1 + 56147 0.66 0.722277
Target:  5'- uGUCGCGUugGcCGCuUUUUCGCACucCGCGCg -3'
miRNA:   3'- -CGGCGCA--C-GCG-AAGGGCGUGc-GCGCG- -5'
24402 3' -61.5 NC_005264.1 + 48956 0.66 0.712809
Target:  5'- gGCCGC-UGCGC-UCCaagcaGUAgGCGCa- -3'
miRNA:   3'- -CGGCGcACGCGaAGGg----CGUgCGCGcg -5'
24402 3' -61.5 NC_005264.1 + 90822 0.66 0.712809
Target:  5'- cUCGCGUGUgGCggCCgCGCACGuCGaGCa -3'
miRNA:   3'- cGGCGCACG-CGaaGG-GCGUGC-GCgCG- -5'
24402 3' -61.5 NC_005264.1 + 148898 0.66 0.709956
Target:  5'- cGCCGCGUGgcauagacuUGCUgcggcagcuuugccUCCUGgACGUucGCGCc -3'
miRNA:   3'- -CGGCGCAC---------GCGA--------------AGGGCgUGCG--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.