miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24402 3' -61.5 NC_005264.1 + 112270 1.13 0.000556
Target:  5'- cGCCGCGUGCGCUUCCCGCACGCGCGCg -3'
miRNA:   3'- -CGGCGCACGCGAAGGGCGUGCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 48092 0.82 0.088623
Target:  5'- cUCGCGgccGCGCgggUUCUGCACGCGCGCg -3'
miRNA:   3'- cGGCGCa--CGCGa--AGGGCGUGCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 96640 0.77 0.172936
Target:  5'- gGCCGCGgagGCGCaccgCCCGCcgAUGCGgGCg -3'
miRNA:   3'- -CGGCGCa--CGCGaa--GGGCG--UGCGCgCG- -5'
24402 3' -61.5 NC_005264.1 + 139539 0.77 0.173353
Target:  5'- cGCCGCacucguggcgauguuUGCGC-UCgCUGCACGCGCGCg -3'
miRNA:   3'- -CGGCGc--------------ACGCGaAG-GGCGUGCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 58751 0.77 0.190322
Target:  5'- cGCCGC-UGCGCUaUCagaggCGCACGCGCGg -3'
miRNA:   3'- -CGGCGcACGCGA-AGg----GCGUGCGCGCg -5'
24402 3' -61.5 NC_005264.1 + 55614 0.77 0.193979
Target:  5'- aGCCGCGgcugGCGCcgaaugccaaCCGCGCGCGcCGCc -3'
miRNA:   3'- -CGGCGCa---CGCGaag-------GGCGUGCGC-GCG- -5'
24402 3' -61.5 NC_005264.1 + 100980 0.76 0.199578
Target:  5'- uGgUGCGUGCGUUUuucgccaacaaCCCGUACGCgGCGCa -3'
miRNA:   3'- -CgGCGCACGCGAA-----------GGGCGUGCG-CGCG- -5'
24402 3' -61.5 NC_005264.1 + 134776 0.75 0.238939
Target:  5'- cCCGUGUuCGCUUCCgCGCGCuuuuacccggcgucGCGCGCg -3'
miRNA:   3'- cGGCGCAcGCGAAGG-GCGUG--------------CGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 117292 0.75 0.246192
Target:  5'- -aCGCGUGCGCgaugCCGCucucCGCGUGCg -3'
miRNA:   3'- cgGCGCACGCGaag-GGCGu---GCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 79301 0.74 0.263626
Target:  5'- cGCCGCGUGCggggucaugucGC-UCgCCGCAUuuGCGUGCg -3'
miRNA:   3'- -CGGCGCACG-----------CGaAG-GGCGUG--CGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 108483 0.74 0.2721
Target:  5'- gGCCGCGcGaCGCUUCUaaggcucgccauaaaCGC-CGCGCGCu -3'
miRNA:   3'- -CGGCGCaC-GCGAAGG---------------GCGuGCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 65613 0.74 0.288414
Target:  5'- uGCUGCGUuCGCggCUCGUggguacccGCGCGCGCa -3'
miRNA:   3'- -CGGCGCAcGCGaaGGGCG--------UGCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 92300 0.74 0.29489
Target:  5'- gGCgGCGUGUGUUUUCUGUAUaCGCGCc -3'
miRNA:   3'- -CGgCGCACGCGAAGGGCGUGcGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 114739 0.73 0.301479
Target:  5'- aGCCGCGcGCGUgcagaaCCCGCGCGgccgcgguauUGCGCu -3'
miRNA:   3'- -CGGCGCaCGCGaa----GGGCGUGC----------GCGCG- -5'
24402 3' -61.5 NC_005264.1 + 109978 0.73 0.301479
Target:  5'- -gCGCGUGUGCacgUCGUAUGCGCGCa -3'
miRNA:   3'- cgGCGCACGCGaagGGCGUGCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 76346 0.73 0.321925
Target:  5'- gGCCGCGcgGCGaCUgCgCGCAgGCGCGUu -3'
miRNA:   3'- -CGGCGCa-CGC-GAaGgGCGUgCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 36758 0.73 0.336121
Target:  5'- cGCCGgcCG-GCGCcgUCgCCGCuuGCGCGCa -3'
miRNA:   3'- -CGGC--GCaCGCGa-AG-GGCGugCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 155784 0.73 0.336121
Target:  5'- cGCCGgcCG-GCGCcgUCgCCGCuuGCGCGCa -3'
miRNA:   3'- -CGGC--GCaCGCGa-AG-GGCGugCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 4763 0.73 0.343389
Target:  5'- gGCUGaUGUGCGCcUUCUGCGCG-GCGCc -3'
miRNA:   3'- -CGGC-GCACGCGaAGGGCGUGCgCGCG- -5'
24402 3' -61.5 NC_005264.1 + 49898 0.73 0.343389
Target:  5'- uGCCaaaGCGuUGCGCgcccaaaUCCCGCugGCG-GCg -3'
miRNA:   3'- -CGG---CGC-ACGCGa------AGGGCGugCGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.