Results 21 - 40 of 231 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24402 | 3' | -61.5 | NC_005264.1 | + | 33249 | 0.72 | 0.358261 |
Target: 5'- cGCCGCGc-CGCagcgCCUGCAgaGCGCGCa -3' miRNA: 3'- -CGGCGCacGCGaa--GGGCGUg-CGCGCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 24496 | 0.72 | 0.365865 |
Target: 5'- aGUCGCGUucggGCGCcuugUCgCGCACGCGC-Ca -3' miRNA: 3'- -CGGCGCA----CGCGa---AGgGCGUGCGCGcG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 98029 | 0.72 | 0.372802 |
Target: 5'- cGUCGUGagcccUGCGCUUCCgGUGCccaugggggcgcuGCGCGCa -3' miRNA: 3'- -CGGCGC-----ACGCGAAGGgCGUG-------------CGCGCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 39546 | 0.72 | 0.381403 |
Target: 5'- cGCCGCcccGCGgUUCCCGCGCG-GCa- -3' miRNA: 3'- -CGGCGca-CGCgAAGGGCGUGCgCGcg -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 56315 | 0.72 | 0.381403 |
Target: 5'- uCCGCGgccGCGCUg-CCGC-CGuCGCGCa -3' miRNA: 3'- cGGCGCa--CGCGAagGGCGuGC-GCGCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 158573 | 0.72 | 0.381403 |
Target: 5'- cGCCGCcccGCGgUUCCCGCGCG-GCa- -3' miRNA: 3'- -CGGCGca-CGCgAAGGGCGUGCgCGcg -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 125173 | 0.72 | 0.389335 |
Target: 5'- gGCCGC--GCGCccgUCgCGCAuCGCGUGCa -3' miRNA: 3'- -CGGCGcaCGCGa--AGgGCGU-GCGCGCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 40851 | 0.72 | 0.389335 |
Target: 5'- gGCCGCcgaucuaGCGCagaaaCCCGCuuGCGCGCu -3' miRNA: 3'- -CGGCGca-----CGCGaa---GGGCGugCGCGCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 54048 | 0.72 | 0.389335 |
Target: 5'- uGCCGaCGUGCGCaaCgCGUGCGCGauuCGCa -3' miRNA: 3'- -CGGC-GCACGCGaaGgGCGUGCGC---GCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 6146 | 0.72 | 0.389335 |
Target: 5'- gGCCGC--GCGCccgUCgCGCAuCGCGUGCa -3' miRNA: 3'- -CGGCGcaCGCGa--AGgGCGU-GCGCGCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 45811 | 0.72 | 0.389335 |
Target: 5'- cGCCGCGcugaucGCGCUguaCUCGuCAUGCGcCGCg -3' miRNA: 3'- -CGGCGCa-----CGCGAa--GGGC-GUGCGC-GCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 120812 | 0.71 | 0.397374 |
Target: 5'- gGCCGCGUGCGCgucgacaCUGC-CGC-CGUg -3' miRNA: 3'- -CGGCGCACGCGaag----GGCGuGCGcGCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 35509 | 0.71 | 0.397374 |
Target: 5'- cGCCGCG-GCGCaggugccCCCGUcgcccACGgGCGCc -3' miRNA: 3'- -CGGCGCaCGCGaa-----GGGCG-----UGCgCGCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 154536 | 0.71 | 0.397374 |
Target: 5'- cGCCGCG-GCGCaggugccCCCGUcgcccACGgGCGCc -3' miRNA: 3'- -CGGCGCaCGCGaa-----GGGCG-----UGCgCGCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 53255 | 0.71 | 0.398184 |
Target: 5'- cCCGCGgGCGCgugucuggcuugcugUCCCGCGgCGC-CGCa -3' miRNA: 3'- cGGCGCaCGCGa--------------AGGGCGU-GCGcGCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 75545 | 0.71 | 0.40552 |
Target: 5'- gGCCGCGUaCGC-UCCCGUaACGCGgaugauaggguCGCa -3' miRNA: 3'- -CGGCGCAcGCGaAGGGCG-UGCGC-----------GCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 70666 | 0.71 | 0.417098 |
Target: 5'- gGCCGCG-GCGCcgCCgGCAggcaauuuuuacgccCGCGgGCg -3' miRNA: 3'- -CGGCGCaCGCGaaGGgCGU---------------GCGCgCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 148305 | 0.71 | 0.421282 |
Target: 5'- cGCgCGCGUGCGCgccggugUUCGUauggucugagguuGCGUGCGCg -3' miRNA: 3'- -CG-GCGCACGCGaa-----GGGCG-------------UGCGCGCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 149646 | 0.71 | 0.422122 |
Target: 5'- gGCgGCG-GCGaCggaUCCGCGCGCaGCGCg -3' miRNA: 3'- -CGgCGCaCGC-Gaa-GGGCGUGCG-CGCG- -5' |
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24402 | 3' | -61.5 | NC_005264.1 | + | 50567 | 0.71 | 0.422122 |
Target: 5'- cGCgCGCGUGCGggaagCGCACGCgGCGCu -3' miRNA: 3'- -CG-GCGCACGCgaaggGCGUGCG-CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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