miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24402 3' -61.5 NC_005264.1 + 16076 0.66 0.712809
Target:  5'- cGCCGCGcgGCGCUUgCUGUugccgggucCGC-CGCc -3'
miRNA:   3'- -CGGCGCa-CGCGAAgGGCGu--------GCGcGCG- -5'
24402 3' -61.5 NC_005264.1 + 87903 0.66 0.709956
Target:  5'- cGUCGCGUcccgauacuucuacGCGCUcCCCGUaaauggcuucuACGCGaauCGCa -3'
miRNA:   3'- -CGGCGCA--------------CGCGAaGGGCG-----------UGCGC---GCG- -5'
24402 3' -61.5 NC_005264.1 + 148898 0.66 0.709956
Target:  5'- cGCCGCGUGgcauagacuUGCUgcggcagcuuugccUCCUGgACGUucGCGCc -3'
miRNA:   3'- -CGGCGCAC---------GCGA--------------AGGGCgUGCG--CGCG- -5'
24402 3' -61.5 NC_005264.1 + 66474 0.66 0.707098
Target:  5'- cGCCGCG-GCcagacucaaugcuugGCgggCUGCGCGgCGCGCu -3'
miRNA:   3'- -CGGCGCaCG---------------CGaagGGCGUGC-GCGCG- -5'
24402 3' -61.5 NC_005264.1 + 83232 0.66 0.707098
Target:  5'- -gCGCGUGgGCgUCUaggccgccgcugaugCGCugGCGCGg -3'
miRNA:   3'- cgGCGCACgCGaAGG---------------GCGugCGCGCg -5'
24402 3' -61.5 NC_005264.1 + 42433 0.66 0.703279
Target:  5'- uUCGCGUucgGCGCUg-CgGCACuCGCGCu -3'
miRNA:   3'- cGGCGCA---CGCGAagGgCGUGcGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 8619 0.66 0.703279
Target:  5'- -aCGCGcaccgguagGCGCUUCaCCGCcACGUcuacguuucGCGCg -3'
miRNA:   3'- cgGCGCa--------CGCGAAG-GGCG-UGCG---------CGCG- -5'
24402 3' -61.5 NC_005264.1 + 157620 0.66 0.703279
Target:  5'- gGCCGCGgaaGaagaGCUUCgccUCGC-CGCgGCGCg -3'
miRNA:   3'- -CGGCGCa--Cg---CGAAG---GGCGuGCG-CGCG- -5'
24402 3' -61.5 NC_005264.1 + 77926 0.66 0.703279
Target:  5'- cCCGCGccugGCuCUUCCCGCccucccguccuGCGCGgccCGCu -3'
miRNA:   3'- cGGCGCa---CGcGAAGGGCG-----------UGCGC---GCG- -5'
24402 3' -61.5 NC_005264.1 + 93242 0.66 0.703279
Target:  5'- cGCCGgGcgGCGCccucgUCgGCGCGUucGCGCa -3'
miRNA:   3'- -CGGCgCa-CGCGaa---GGgCGUGCG--CGCG- -5'
24402 3' -61.5 NC_005264.1 + 75388 0.66 0.703279
Target:  5'- aGUCGUgGUGCGCgccaCCGUcUGCGCGg -3'
miRNA:   3'- -CGGCG-CACGCGaag-GGCGuGCGCGCg -5'
24402 3' -61.5 NC_005264.1 + 38593 0.66 0.703279
Target:  5'- gGCCGCGgaaGaagaGCUUCgccUCGC-CGCgGCGCg -3'
miRNA:   3'- -CGGCGCa--Cg---CGAAG---GGCGuGCG-CGCG- -5'
24402 3' -61.5 NC_005264.1 + 8218 0.66 0.703279
Target:  5'- cCCGCG-GcCGCUggUCCgaGUACGCcaGCGCg -3'
miRNA:   3'- cGGCGCaC-GCGA--AGGg-CGUGCG--CGCG- -5'
24402 3' -61.5 NC_005264.1 + 151003 0.66 0.693694
Target:  5'- gGCCGCGUGU-----CCG-AUGCGCGCu -3'
miRNA:   3'- -CGGCGCACGcgaagGGCgUGCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 1367 0.66 0.693694
Target:  5'- cGCCGaccuaGguacGaUGCaUCCUGCGCGCGuCGCa -3'
miRNA:   3'- -CGGCg----Ca---C-GCGaAGGGCGUGCGC-GCG- -5'
24402 3' -61.5 NC_005264.1 + 31976 0.66 0.693694
Target:  5'- gGCCGCGUGU-----CCG-AUGCGCGCu -3'
miRNA:   3'- -CGGCGCACGcgaagGGCgUGCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 129054 0.66 0.693694
Target:  5'- aGCgGCGUGCGCggCUCGauUGCGCc- -3'
miRNA:   3'- -CGgCGCACGCGaaGGGCguGCGCGcg -5'
24402 3' -61.5 NC_005264.1 + 137285 0.66 0.693694
Target:  5'- uCCGCG-GCGUUggCgGCgACGCGgGCg -3'
miRNA:   3'- cGGCGCaCGCGAagGgCG-UGCGCgCG- -5'
24402 3' -61.5 NC_005264.1 + 147369 0.66 0.693694
Target:  5'- cGCCGCGaucGcCGCUU-UCGCGuCGuCGCGCu -3'
miRNA:   3'- -CGGCGCa--C-GCGAAgGGCGU-GC-GCGCG- -5'
24402 3' -61.5 NC_005264.1 + 18415 0.66 0.693694
Target:  5'- gGCCgGCGcagGCGCgcccUCUCGCuCG-GCGCg -3'
miRNA:   3'- -CGG-CGCa--CGCGa---AGGGCGuGCgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.