miRNA display CGI


Results 41 - 60 of 231 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24402 3' -61.5 NC_005264.1 + 81026 0.66 0.687919
Target:  5'- aGCCaGCG-GCGCcuaCCCGCcgucuacccucacugGCGCGUGg -3'
miRNA:   3'- -CGG-CGCaCGCGaa-GGGCG---------------UGCGCGCg -5'
24402 3' -61.5 NC_005264.1 + 68425 0.66 0.684062
Target:  5'- cGUCaGCGaucGCGCagUCCGCGCcgcggucuGCGCGCg -3'
miRNA:   3'- -CGG-CGCa--CGCGaaGGGCGUG--------CGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 142684 0.66 0.684062
Target:  5'- uGCCGCGaucuUGgGCg-CCgGCG-GCGCGCc -3'
miRNA:   3'- -CGGCGC----ACgCGaaGGgCGUgCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 11968 0.66 0.684062
Target:  5'- gGUCGCGccaUGU-CUUgCCGCGCGCG-GCa -3'
miRNA:   3'- -CGGCGC---ACGcGAAgGGCGUGCGCgCG- -5'
24402 3' -61.5 NC_005264.1 + 115742 0.66 0.684062
Target:  5'- cGCgGCGaGCGCUauacUCUCGC-CGUGCa- -3'
miRNA:   3'- -CGgCGCaCGCGA----AGGGCGuGCGCGcg -5'
24402 3' -61.5 NC_005264.1 + 85058 0.66 0.684062
Target:  5'- cGCCGCG-GUGCgUCuCUGCGgcCGCGuCGUc -3'
miRNA:   3'- -CGGCGCaCGCGaAG-GGCGU--GCGC-GCG- -5'
24402 3' -61.5 NC_005264.1 + 154902 0.66 0.684062
Target:  5'- cGCCGCG-GcCGUggacgacgCgUGgACGCGCGCg -3'
miRNA:   3'- -CGGCGCaC-GCGaa------GgGCgUGCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 157186 0.66 0.684062
Target:  5'- aGCaUGCGUGCGacuaCCGC-CGCGCuGUg -3'
miRNA:   3'- -CG-GCGCACGCgaagGGCGuGCGCG-CG- -5'
24402 3' -61.5 NC_005264.1 + 157078 0.66 0.684062
Target:  5'- gGUCGCGUGgGUcUCCCaGCuuuuuucuUGCGCGg -3'
miRNA:   3'- -CGGCGCACgCGaAGGG-CGu-------GCGCGCg -5'
24402 3' -61.5 NC_005264.1 + 29582 0.66 0.684062
Target:  5'- cGUCGC-UGCGUccuuugUCuuGCGCGUcgGCGCu -3'
miRNA:   3'- -CGGCGcACGCGa-----AGggCGUGCG--CGCG- -5'
24402 3' -61.5 NC_005264.1 + 142326 0.66 0.684062
Target:  5'- -aCGCGUGCcccugGCUUCUCGgCGCaGCGacCGCa -3'
miRNA:   3'- cgGCGCACG-----CGAAGGGC-GUG-CGC--GCG- -5'
24402 3' -61.5 NC_005264.1 + 38159 0.66 0.684062
Target:  5'- aGCaUGCGUGCGacuaCCGC-CGCGCuGUg -3'
miRNA:   3'- -CG-GCGCACGCgaagGGCGuGCGCG-CG- -5'
24402 3' -61.5 NC_005264.1 + 38051 0.66 0.684062
Target:  5'- gGUCGCGUGgGUcUCCCaGCuuuuuucuUGCGCGg -3'
miRNA:   3'- -CGGCGCACgCGaAGGG-CGu-------GCGCGCg -5'
24402 3' -61.5 NC_005264.1 + 103063 0.66 0.683096
Target:  5'- cCUGCGgGCGaCgagUCCCGCGaagcgucCGCGuCGCa -3'
miRNA:   3'- cGGCGCaCGC-Ga--AGGGCGU-------GCGC-GCG- -5'
24402 3' -61.5 NC_005264.1 + 811 0.66 0.678263
Target:  5'- gGCUGgGUGCGCggCCgGcuuuagccucugucuCugGCGUGCc -3'
miRNA:   3'- -CGGCgCACGCGaaGGgC---------------GugCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 108227 0.66 0.674391
Target:  5'- -aCGUG-GC-CgaugUCCCGCACGCGC-Cg -3'
miRNA:   3'- cgGCGCaCGcGa---AGGGCGUGCGCGcG- -5'
24402 3' -61.5 NC_005264.1 + 154941 0.66 0.674391
Target:  5'- aGCCagaGCGUGgGggacgUCGUACGCGCGCa -3'
miRNA:   3'- -CGG---CGCACgCgaag-GGCGUGCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 86490 0.66 0.674391
Target:  5'- -aCGCGccUGCGCgcagUCgCCGCGCGgccaacuuuCGUGCg -3'
miRNA:   3'- cgGCGC--ACGCGa---AG-GGCGUGC---------GCGCG- -5'
24402 3' -61.5 NC_005264.1 + 144952 0.66 0.674391
Target:  5'- aGCUGCuGUGCGCgccguagaucagCCCGCcgauuGCucacgcggucgaacaGCGCGCg -3'
miRNA:   3'- -CGGCG-CACGCGaa----------GGGCG-----UG---------------CGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 103127 0.66 0.674391
Target:  5'- cGgCGCGguaGCcgCCgGCGCGgCGCGCg -3'
miRNA:   3'- -CgGCGCacgCGaaGGgCGUGC-GCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.