miRNA display CGI


Results 1 - 20 of 231 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24402 3' -61.5 NC_005264.1 + 811 0.66 0.678263
Target:  5'- gGCUGgGUGCGCggCCgGcuuuagccucugucuCugGCGUGCc -3'
miRNA:   3'- -CGGCgCACGCGaaGGgC---------------GugCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 1367 0.66 0.693694
Target:  5'- cGCCGaccuaGguacGaUGCaUCCUGCGCGCGuCGCa -3'
miRNA:   3'- -CGGCg----Ca---C-GCGaAGGGCGUGCGC-GCG- -5'
24402 3' -61.5 NC_005264.1 + 3433 0.71 0.439126
Target:  5'- gGCCGCGcccGCGCUgCUCGCAaa-GCGCc -3'
miRNA:   3'- -CGGCGCa--CGCGAaGGGCGUgcgCGCG- -5'
24402 3' -61.5 NC_005264.1 + 4763 0.73 0.343389
Target:  5'- gGCUGaUGUGCGCcUUCUGCGCG-GCGCc -3'
miRNA:   3'- -CGGC-GCACGCGaAGGGCGUGCgCGCG- -5'
24402 3' -61.5 NC_005264.1 + 5390 0.69 0.548373
Target:  5'- aGCCGCGUcUGUauUUCCCGCuCGUacuucaGCGCc -3'
miRNA:   3'- -CGGCGCAcGCG--AAGGGCGuGCG------CGCG- -5'
24402 3' -61.5 NC_005264.1 + 5530 0.68 0.567508
Target:  5'- aGCCGCG-GCGU--CUCGCGCGgaGCGg -3'
miRNA:   3'- -CGGCGCaCGCGaaGGGCGUGCg-CGCg -5'
24402 3' -61.5 NC_005264.1 + 5627 0.69 0.548373
Target:  5'- gGCCGCGcGaCGCUaggugUCCC-CACaGCGCGg -3'
miRNA:   3'- -CGGCGCaC-GCGA-----AGGGcGUG-CGCGCg -5'
24402 3' -61.5 NC_005264.1 + 5667 0.67 0.664689
Target:  5'- cGCaCGCaUGCuGCgUUCCCacgaguacagaGCGCGCGgGCa -3'
miRNA:   3'- -CG-GCGcACG-CG-AAGGG-----------CGUGCGCgCG- -5'
24402 3' -61.5 NC_005264.1 + 6146 0.72 0.389335
Target:  5'- gGCCGC--GCGCccgUCgCGCAuCGCGUGCa -3'
miRNA:   3'- -CGGCGcaCGCGa--AGgGCGU-GCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 6890 0.71 0.422122
Target:  5'- uCCGCGagccGCGCagUCCCaGCGCGCG-GCu -3'
miRNA:   3'- cGGCGCa---CGCGa-AGGG-CGUGCGCgCG- -5'
24402 3' -61.5 NC_005264.1 + 7057 0.67 0.654963
Target:  5'- aGCgGCGacgGCGCcggCCgGCGCcGuCGCGCu -3'
miRNA:   3'- -CGgCGCa--CGCGaa-GGgCGUG-C-GCGCG- -5'
24402 3' -61.5 NC_005264.1 + 7881 0.7 0.44517
Target:  5'- cGCUGCGcaucUGCGCgcguacgacgUCCCccacgcucuggcuaGCaACGCGCGCg -3'
miRNA:   3'- -CGGCGC----ACGCGa---------AGGG--------------CG-UGCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 8218 0.66 0.703279
Target:  5'- cCCGCG-GcCGCUggUCCgaGUACGCcaGCGCg -3'
miRNA:   3'- cGGCGCaC-GCGA--AGGg-CGUGCG--CGCG- -5'
24402 3' -61.5 NC_005264.1 + 8302 0.7 0.492359
Target:  5'- uCCGCGUGCcaucgCCgGCACGCuuguuuGCGCg -3'
miRNA:   3'- cGGCGCACGcgaa-GGgCGUGCG------CGCG- -5'
24402 3' -61.5 NC_005264.1 + 8619 0.66 0.703279
Target:  5'- -aCGCGcaccgguagGCGCUUCaCCGCcACGUcuacguuucGCGCg -3'
miRNA:   3'- cgGCGCa--------CGCGAAG-GGCG-UGCG---------CGCG- -5'
24402 3' -61.5 NC_005264.1 + 10074 0.69 0.53888
Target:  5'- aGCCGCG-GCGgaaucUCCCGC-CGgGgGCa -3'
miRNA:   3'- -CGGCGCaCGCga---AGGGCGuGCgCgCG- -5'
24402 3' -61.5 NC_005264.1 + 11968 0.66 0.684062
Target:  5'- gGUCGCGccaUGU-CUUgCCGCGCGCG-GCa -3'
miRNA:   3'- -CGGCGC---ACGcGAAgGGCGUGCGCgCG- -5'
24402 3' -61.5 NC_005264.1 + 13403 0.71 0.430575
Target:  5'- cGCCGCa---GCUcUCCGCACcgGCGCGCg -3'
miRNA:   3'- -CGGCGcacgCGAaGGGCGUG--CGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 14334 0.68 0.577139
Target:  5'- uCCGCG-GCGC-UCgCCGCcaACGCGaccaGCg -3'
miRNA:   3'- cGGCGCaCGCGaAG-GGCG--UGCGCg---CG- -5'
24402 3' -61.5 NC_005264.1 + 14715 0.66 0.712809
Target:  5'- uUUGCGUGUGUa-CgCGCACGUGuCGCg -3'
miRNA:   3'- cGGCGCACGCGaaGgGCGUGCGC-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.