miRNA display CGI


Results 21 - 40 of 231 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24402 3' -61.5 NC_005264.1 + 16076 0.66 0.712809
Target:  5'- cGCCGCGcgGCGCUUgCUGUugccgggucCGC-CGCc -3'
miRNA:   3'- -CGGCGCa-CGCGAAgGGCGu--------GCGcGCG- -5'
24402 3' -61.5 NC_005264.1 + 16437 0.69 0.52007
Target:  5'- uGCCGCG-GgGCcugCCCGCGgGUGUGa -3'
miRNA:   3'- -CGGCGCaCgCGaa-GGGCGUgCGCGCg -5'
24402 3' -61.5 NC_005264.1 + 17369 0.69 0.501523
Target:  5'- gGCgGCG-GCGCggUCUgUGUACGUGCGCc -3'
miRNA:   3'- -CGgCGCaCGCGa-AGG-GCGUGCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 18054 0.68 0.577139
Target:  5'- aGCgGCG-GCGCcgcgagCCaggGCGCGCGgGCa -3'
miRNA:   3'- -CGgCGCaCGCGaa----GGg--CGUGCGCgCG- -5'
24402 3' -61.5 NC_005264.1 + 18415 0.66 0.693694
Target:  5'- gGCCgGCGcagGCGCgcccUCUCGCuCG-GCGCg -3'
miRNA:   3'- -CGG-CGCa--CGCGa---AGGGCGuGCgCGCG- -5'
24402 3' -61.5 NC_005264.1 + 19063 0.7 0.483272
Target:  5'- cCCGCGggaagcGCGCUUCCCGCGCauaGgGaGCc -3'
miRNA:   3'- cGGCGCa-----CGCGAAGGGCGUG---CgCgCG- -5'
24402 3' -61.5 NC_005264.1 + 19998 0.67 0.654963
Target:  5'- aCCGCGcuCGCUcgcaUCCgGUugGCGCGa -3'
miRNA:   3'- cGGCGCacGCGA----AGGgCGugCGCGCg -5'
24402 3' -61.5 NC_005264.1 + 20258 0.68 0.577139
Target:  5'- gGuuGCG-GCGCggCCuCGCGgaggggaccgucUGCGCGCu -3'
miRNA:   3'- -CggCGCaCGCGaaGG-GCGU------------GCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 24496 0.72 0.365865
Target:  5'- aGUCGCGUucggGCGCcuugUCgCGCACGCGC-Ca -3'
miRNA:   3'- -CGGCGCA----CGCGa---AGgGCGUGCGCGcG- -5'
24402 3' -61.5 NC_005264.1 + 26769 0.7 0.492359
Target:  5'- -aCGCG-GCGgUauccgacucgaUCCUGCACGCGgGCu -3'
miRNA:   3'- cgGCGCaCGCgA-----------AGGGCGUGCGCgCG- -5'
24402 3' -61.5 NC_005264.1 + 28022 0.69 0.548373
Target:  5'- gGUCGgGgGCGggagguCUUCCgGCGCGCGCGa -3'
miRNA:   3'- -CGGCgCaCGC------GAAGGgCGUGCGCGCg -5'
24402 3' -61.5 NC_005264.1 + 29582 0.66 0.684062
Target:  5'- cGUCGC-UGCGUccuuugUCuuGCGCGUcgGCGCu -3'
miRNA:   3'- -CGGCGcACGCGa-----AGggCGUGCG--CGCG- -5'
24402 3' -61.5 NC_005264.1 + 29894 0.69 0.523812
Target:  5'- uGCCGCGaaggcgugcgGCGCUacCCCGUcggcgcuagggagguACGCGCuGCg -3'
miRNA:   3'- -CGGCGCa---------CGCGAa-GGGCG---------------UGCGCG-CG- -5'
24402 3' -61.5 NC_005264.1 + 30380 0.7 0.447774
Target:  5'- cGCCGCGU-CGCgUCUCgGCGgcggcgguCGCGCGCc -3'
miRNA:   3'- -CGGCGCAcGCGaAGGG-CGU--------GCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 30619 0.71 0.422122
Target:  5'- gGCgGCG-GCGaCggaUCCGCGCGCaGCGCg -3'
miRNA:   3'- -CGgCGCaCGC-Gaa-GGGCGUGCG-CGCG- -5'
24402 3' -61.5 NC_005264.1 + 31233 0.69 0.52007
Target:  5'- uCCGCGcGCGC--CCaCGCGCGC-CGCu -3'
miRNA:   3'- cGGCGCaCGCGaaGG-GCGUGCGcGCG- -5'
24402 3' -61.5 NC_005264.1 + 31689 0.68 0.586807
Target:  5'- uCgGCG-GgGCUgCCCGCcaaagguCGCGCGCg -3'
miRNA:   3'- cGgCGCaCgCGAaGGGCGu------GCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 31812 0.68 0.606226
Target:  5'- cGCCGCaggucGUGaCGCguacucUgCCGUGcCGCGCGCg -3'
miRNA:   3'- -CGGCG-----CAC-GCGa-----AgGGCGU-GCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 31976 0.66 0.693694
Target:  5'- gGCCGCGUGU-----CCG-AUGCGCGCu -3'
miRNA:   3'- -CGGCGCACGcgaagGGCgUGCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 32563 0.67 0.664689
Target:  5'- uGCCGCGguaGCcg-CCGCaACGuCGCGCa -3'
miRNA:   3'- -CGGCGCacgCGaagGGCG-UGC-GCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.