miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24402 3' -61.5 NC_005264.1 + 70666 0.71 0.417098
Target:  5'- gGCCGCG-GCGCcgCCgGCAggcaauuuuuacgccCGCGgGCg -3'
miRNA:   3'- -CGGCGCaCGCGaaGGgCGU---------------GCGCgCG- -5'
24402 3' -61.5 NC_005264.1 + 33249 0.72 0.358261
Target:  5'- cGCCGCGc-CGCagcgCCUGCAgaGCGCGCa -3'
miRNA:   3'- -CGGCGCacGCGaa--GGGCGUg-CGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 24496 0.72 0.365865
Target:  5'- aGUCGCGUucggGCGCcuugUCgCGCACGCGC-Ca -3'
miRNA:   3'- -CGGCGCA----CGCGa---AGgGCGUGCGCGcG- -5'
24402 3' -61.5 NC_005264.1 + 56315 0.72 0.381403
Target:  5'- uCCGCGgccGCGCUg-CCGC-CGuCGCGCa -3'
miRNA:   3'- cGGCGCa--CGCGAagGGCGuGC-GCGCG- -5'
24402 3' -61.5 NC_005264.1 + 158573 0.72 0.381403
Target:  5'- cGCCGCcccGCGgUUCCCGCGCG-GCa- -3'
miRNA:   3'- -CGGCGca-CGCgAAGGGCGUGCgCGcg -5'
24402 3' -61.5 NC_005264.1 + 40851 0.72 0.389335
Target:  5'- gGCCGCcgaucuaGCGCagaaaCCCGCuuGCGCGCu -3'
miRNA:   3'- -CGGCGca-----CGCGaa---GGGCGugCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 125173 0.72 0.389335
Target:  5'- gGCCGC--GCGCccgUCgCGCAuCGCGUGCa -3'
miRNA:   3'- -CGGCGcaCGCGa--AGgGCGU-GCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 154536 0.71 0.397374
Target:  5'- cGCCGCG-GCGCaggugccCCCGUcgcccACGgGCGCc -3'
miRNA:   3'- -CGGCGCaCGCGaa-----GGGCG-----UGCgCGCG- -5'
24402 3' -61.5 NC_005264.1 + 53255 0.71 0.398184
Target:  5'- cCCGCGgGCGCgugucuggcuugcugUCCCGCGgCGC-CGCa -3'
miRNA:   3'- cGGCGCaCGCGa--------------AGGGCGU-GCGcGCG- -5'
24402 3' -61.5 NC_005264.1 + 49898 0.73 0.343389
Target:  5'- uGCCaaaGCGuUGCGCgcccaaaUCCCGCugGCG-GCg -3'
miRNA:   3'- -CGG---CGC-ACGCGa------AGGGCGugCGCgCG- -5'
24402 3' -61.5 NC_005264.1 + 4763 0.73 0.343389
Target:  5'- gGCUGaUGUGCGCcUUCUGCGCG-GCGCc -3'
miRNA:   3'- -CGGC-GCACGCGaAGGGCGUGCgCGCG- -5'
24402 3' -61.5 NC_005264.1 + 155784 0.73 0.336121
Target:  5'- cGCCGgcCG-GCGCcgUCgCCGCuuGCGCGCa -3'
miRNA:   3'- -CGGC--GCaCGCGa-AG-GGCGugCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 58751 0.77 0.190322
Target:  5'- cGCCGC-UGCGCUaUCagaggCGCACGCGCGg -3'
miRNA:   3'- -CGGCGcACGCGA-AGg----GCGUGCGCGCg -5'
24402 3' -61.5 NC_005264.1 + 117292 0.75 0.246192
Target:  5'- -aCGCGUGCGCgaugCCGCucucCGCGUGCg -3'
miRNA:   3'- cgGCGCACGCGaag-GGCGu---GCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 79301 0.74 0.263626
Target:  5'- cGCCGCGUGCggggucaugucGC-UCgCCGCAUuuGCGUGCg -3'
miRNA:   3'- -CGGCGCACG-----------CGaAG-GGCGUG--CGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 65613 0.74 0.288414
Target:  5'- uGCUGCGUuCGCggCUCGUggguacccGCGCGCGCa -3'
miRNA:   3'- -CGGCGCAcGCGaaGGGCG--------UGCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 92300 0.74 0.29489
Target:  5'- gGCgGCGUGUGUUUUCUGUAUaCGCGCc -3'
miRNA:   3'- -CGgCGCACGCGAAGGGCGUGcGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 109978 0.73 0.301479
Target:  5'- -gCGCGUGUGCacgUCGUAUGCGCGCa -3'
miRNA:   3'- cgGCGCACGCGaagGGCGUGCGCGCG- -5'
24402 3' -61.5 NC_005264.1 + 114739 0.73 0.301479
Target:  5'- aGCCGCGcGCGUgcagaaCCCGCGCGgccgcgguauUGCGCu -3'
miRNA:   3'- -CGGCGCaCGCGaa----GGGCGUGC----------GCGCG- -5'
24402 3' -61.5 NC_005264.1 + 76346 0.73 0.321925
Target:  5'- gGCCGCGcgGCGaCUgCgCGCAgGCGCGUu -3'
miRNA:   3'- -CGGCGCa-CGC-GAaGgGCGUgCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.