miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24402 5' -57.6 NC_005264.1 + 47563 0.66 0.856636
Target:  5'- uGACgaAGGCCUCgugccagauaUGGCu-CGCGGGGAc -3'
miRNA:   3'- gCUG--UCCGGAGa---------ACCGucGCGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 46325 0.66 0.848839
Target:  5'- -cAUGGGCCa-UUGGCaauacGGCGCGGAGGc -3'
miRNA:   3'- gcUGUCCGGagAACCG-----UCGCGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 156609 0.66 0.848839
Target:  5'- gCGGCAaGUCUCgcGGCGGCcgcgGCGGGGGg -3'
miRNA:   3'- -GCUGUcCGGAGaaCCGUCG----CGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 37582 0.66 0.848839
Target:  5'- gCGGCAaGUCUCgcGGCGGCcgcgGCGGGGGg -3'
miRNA:   3'- -GCUGUcCGGAGaaCCGUCG----CGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 19094 0.66 0.832671
Target:  5'- aGcCAGGaCUgcacCgcGGCGGCGCGGAGAc -3'
miRNA:   3'- gCuGUCC-GGa---GaaCCGUCGCGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 4247 0.66 0.832671
Target:  5'- -uGCGGaGCCUCUUGccGCcGCGCAGcGAg -3'
miRNA:   3'- gcUGUC-CGGAGAAC--CGuCGCGUCuCU- -5'
24402 5' -57.6 NC_005264.1 + 142976 0.66 0.832671
Target:  5'- gCGGC-GGUCUCUcgGGCaugaggcgGGCGUGGGGAc -3'
miRNA:   3'- -GCUGuCCGGAGAa-CCG--------UCGCGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 133732 0.66 0.832671
Target:  5'- cCGACAG-CC-CUU-GCGGCGCuGGGAg -3'
miRNA:   3'- -GCUGUCcGGaGAAcCGUCGCGuCUCU- -5'
24402 5' -57.6 NC_005264.1 + 35971 0.66 0.832671
Target:  5'- gCGAUucGCCUggaGGgGGCGCGGAGAg -3'
miRNA:   3'- -GCUGucCGGAgaaCCgUCGCGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 159248 0.66 0.824313
Target:  5'- gCGGCGGuaauucuucgcGCCUCcUGGCGuuaCGCGGAGGa -3'
miRNA:   3'- -GCUGUC-----------CGGAGaACCGUc--GCGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 40221 0.66 0.824313
Target:  5'- gCGGCGGuaauucuucgcGCCUCcUGGCGuuaCGCGGAGGa -3'
miRNA:   3'- -GCUGUC-----------CGGAGaACCGUc--GCGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 13936 0.66 0.824313
Target:  5'- gGAauaGGGUCUU-UGGCuAGCGCgAGAGAu -3'
miRNA:   3'- gCUg--UCCGGAGaACCG-UCGCG-UCUCU- -5'
24402 5' -57.6 NC_005264.1 + 74274 0.66 0.824313
Target:  5'- aGGCgGGGCCUCauaUGGCAGCauuaGCGGcGGu -3'
miRNA:   3'- gCUG-UCCGGAGa--ACCGUCG----CGUCuCU- -5'
24402 5' -57.6 NC_005264.1 + 97385 0.66 0.824313
Target:  5'- -cGCAGGCC-CgcaGGCcGUGCAGAGu -3'
miRNA:   3'- gcUGUCCGGaGaa-CCGuCGCGUCUCu -5'
24402 5' -57.6 NC_005264.1 + 10745 0.67 0.815783
Target:  5'- cCGAC-GGCaugaUCgaucaggUGGUAGCGCAGAc- -3'
miRNA:   3'- -GCUGuCCGg---AGa------ACCGUCGCGUCUcu -5'
24402 5' -57.6 NC_005264.1 + 4433 0.67 0.813191
Target:  5'- cCGACgucgucaucgucugAGGCCUC-UGGCuGCGCGauucugggcGGGAa -3'
miRNA:   3'- -GCUG--------------UCCGGAGaACCGuCGCGU---------CUCU- -5'
24402 5' -57.6 NC_005264.1 + 123460 0.67 0.813191
Target:  5'- cCGACgucgucaucgucugAGGCCUC-UGGCuGCGCGauucugggcGGGAa -3'
miRNA:   3'- -GCUG--------------UCCGGAGaACCGuCGCGU---------CUCU- -5'
24402 5' -57.6 NC_005264.1 + 9929 0.67 0.807088
Target:  5'- -uGCGGGCUUUgcGGC-GCGCuGAGAg -3'
miRNA:   3'- gcUGUCCGGAGaaCCGuCGCGuCUCU- -5'
24402 5' -57.6 NC_005264.1 + 122702 0.67 0.807088
Target:  5'- gGGC-GGCCgUCUcGGCGGCGagacgaGGAGGa -3'
miRNA:   3'- gCUGuCCGG-AGAaCCGUCGCg-----UCUCU- -5'
24402 5' -57.6 NC_005264.1 + 116421 0.67 0.807088
Target:  5'- gCGGCAGGUCgCUgggGGCgucuGGCcGCGGGGGc -3'
miRNA:   3'- -GCUGUCCGGaGAa--CCG----UCG-CGUCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.