Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 24402 | 5' | -57.6 | NC_005264.1 | + | 69782 | 0.71 | 0.571557 |
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Target: 5'- gGGCggAGGCCgCaUGGCAGCGCAGcAGc -3' miRNA: 3'- gCUG--UCCGGaGaACCGUCGCGUC-UCu -5' |
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| 24402 | 5' | -57.6 | NC_005264.1 | + | 158520 | 0.71 | 0.541661 |
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Target: 5'- gGGCAGGCCUgCgcugUGGUGGaCGcCAGGGAc -3' miRNA: 3'- gCUGUCCGGA-Ga---ACCGUC-GC-GUCUCU- -5' |
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| 24402 | 5' | -57.6 | NC_005264.1 | + | 129497 | 0.71 | 0.571557 |
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Target: 5'- gCGGCGGcGCagggUUUGGCGGCGcCGGAGGc -3' miRNA: 3'- -GCUGUC-CGga--GAACCGUCGC-GUCUCU- -5' |
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| 24402 | 5' | -57.6 | NC_005264.1 | + | 27164 | 0.72 | 0.502662 |
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Target: 5'- cCGuGCAGGCCgUCUUcacGGCGGCGCAuAGGa -3' miRNA: 3'- -GC-UGUCCGG-AGAA---CCGUCGCGUcUCU- -5' |
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| 24402 | 5' | -57.6 | NC_005264.1 | + | 121526 | 0.76 | 0.307766 |
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Target: 5'- uCGGCGGGCCUCgcgcgacuuCAGCGCGGGGGg -3' miRNA: 3'- -GCUGUCCGGAGaacc-----GUCGCGUCUCU- -5' |
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| 24402 | 5' | -57.6 | NC_005264.1 | + | 2499 | 0.76 | 0.307766 |
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Target: 5'- uCGGCGGGCCUCgcgcgacuuCAGCGCGGGGGg -3' miRNA: 3'- -GCUGUCCGGAGaacc-----GUCGCGUCUCU- -5' |
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| 24402 | 5' | -57.6 | NC_005264.1 | + | 73784 | 0.8 | 0.182371 |
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Target: 5'- gGGUAGGCCUCUUGGaagauGGCGCAGGGGu -3' miRNA: 3'- gCUGUCCGGAGAACCg----UCGCGUCUCU- -5' |
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| 24402 | 5' | -57.6 | NC_005264.1 | + | 24300 | 0.82 | 0.134551 |
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Target: 5'- aCGGC-GGCCUCUgUGGCuacGCGCAGAGAg -3' miRNA: 3'- -GCUGuCCGGAGA-ACCGu--CGCGUCUCU- -5' |
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| 24402 | 5' | -57.6 | NC_005264.1 | + | 112305 | 1.08 | 0.002222 |
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Target: 5'- uCGACAGGCCUCUUGGCAGCGCAGAGAc -3' miRNA: 3'- -GCUGUCCGGAGAACCGUCGCGUCUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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