Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24402 | 5' | -57.6 | NC_005264.1 | + | 159248 | 0.66 | 0.824313 |
Target: 5'- gCGGCGGuaauucuucgcGCCUCcUGGCGuuaCGCGGAGGa -3' miRNA: 3'- -GCUGUC-----------CGGAGaACCGUc--GCGUCUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 159019 | 0.67 | 0.798236 |
Target: 5'- -aGCAGGUCUCc--GC-GCGCAGGGAg -3' miRNA: 3'- gcUGUCCGGAGaacCGuCGCGUCUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 158520 | 0.71 | 0.541661 |
Target: 5'- gGGCAGGCCUgCgcugUGGUGGaCGcCAGGGAc -3' miRNA: 3'- gCUGUCCGGA-Ga---ACCGUC-GC-GUCUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 156609 | 0.66 | 0.848839 |
Target: 5'- gCGGCAaGUCUCgcGGCGGCcgcgGCGGGGGg -3' miRNA: 3'- -GCUGUcCGGAGaaCCGUCG----CGUCUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 142976 | 0.66 | 0.832671 |
Target: 5'- gCGGC-GGUCUCUcgGGCaugaggcgGGCGUGGGGAc -3' miRNA: 3'- -GCUGuCCGGAGAa-CCG--------UCGCGUCUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 135575 | 0.69 | 0.672895 |
Target: 5'- gGGCcaacaGGGCCUCUuccUGGCuacuagagAGCGCAGAa- -3' miRNA: 3'- gCUG-----UCCGGAGA---ACCG--------UCGCGUCUcu -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 133732 | 0.66 | 0.832671 |
Target: 5'- cCGACAG-CC-CUU-GCGGCGCuGGGAg -3' miRNA: 3'- -GCUGUCcGGaGAAcCGUCGCGuCUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 131986 | 0.68 | 0.712956 |
Target: 5'- aCGACAGGCC----GGUGGCGguGGGc -3' miRNA: 3'- -GCUGUCCGGagaaCCGUCGCguCUCu -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 129497 | 0.71 | 0.571557 |
Target: 5'- gCGGCGGcGCagggUUUGGCGGCGcCGGAGGc -3' miRNA: 3'- -GCUGUC-CGga--GAACCGUCGC-GUCUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 128654 | 0.68 | 0.728708 |
Target: 5'- -aGCAGGCCagaUCUggucguuggggggGGCAGUGCAGAu- -3' miRNA: 3'- gcUGUCCGG---AGAa------------CCGUCGCGUCUcu -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 125622 | 0.67 | 0.770827 |
Target: 5'- cCGACAGGUCaac-GGCgAGCGCGuGGGAa -3' miRNA: 3'- -GCUGUCCGGagaaCCG-UCGCGU-CUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 123460 | 0.67 | 0.813191 |
Target: 5'- cCGACgucgucaucgucugAGGCCUC-UGGCuGCGCGauucugggcGGGAa -3' miRNA: 3'- -GCUG--------------UCCGGAGaACCGuCGCGU---------CUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 122702 | 0.67 | 0.807088 |
Target: 5'- gGGC-GGCCgUCUcGGCGGCGagacgaGGAGGa -3' miRNA: 3'- gCUGuCCGG-AGAaCCGUCGCg-----UCUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 121526 | 0.76 | 0.307766 |
Target: 5'- uCGGCGGGCCUCgcgcgacuuCAGCGCGGGGGg -3' miRNA: 3'- -GCUGUCCGGAGaacc-----GUCGCGUCUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 116421 | 0.67 | 0.807088 |
Target: 5'- gCGGCAGGUCgCUgggGGCgucuGGCcGCGGGGGc -3' miRNA: 3'- -GCUGUCCGGaGAa--CCG----UCG-CGUCUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 112305 | 1.08 | 0.002222 |
Target: 5'- uCGACAGGCCUCUUGGCAGCGCAGAGAc -3' miRNA: 3'- -GCUGUCCGGAGAACCGUCGCGUCUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 102907 | 0.67 | 0.780097 |
Target: 5'- gCGACGcuGGUggaaCUCUUGGCcgagcuGCGCGGAGc -3' miRNA: 3'- -GCUGU--CCG----GAGAACCGu-----CGCGUCUCu -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 98519 | 0.69 | 0.672895 |
Target: 5'- aCGGgGGGCCucagUCUUGGCAGCgGCAa--- -3' miRNA: 3'- -GCUgUCCGG----AGAACCGUCG-CGUcucu -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 97385 | 0.66 | 0.824313 |
Target: 5'- -cGCAGGCC-CgcaGGCcGUGCAGAGu -3' miRNA: 3'- gcUGUCCGGaGaa-CCGuCGCGUCUCu -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 94605 | 0.7 | 0.622138 |
Target: 5'- -cGCGGGCauggCUUGGCGGUGCGGcguGGAc -3' miRNA: 3'- gcUGUCCGga--GAACCGUCGCGUC---UCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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