miRNA display CGI


Results 21 - 40 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24402 5' -57.6 NC_005264.1 + 77267 0.7 0.608932
Target:  5'- cCGAUAcGGCCUUgggccuggaacgaaUUGGguGCGCGGcAGAu -3'
miRNA:   3'- -GCUGU-CCGGAG--------------AACCguCGCGUC-UCU- -5'
24402 5' -57.6 NC_005264.1 + 74274 0.66 0.824313
Target:  5'- aGGCgGGGCCUCauaUGGCAGCauuaGCGGcGGu -3'
miRNA:   3'- gCUG-UCCGGAGa--ACCGUCG----CGUCuCU- -5'
24402 5' -57.6 NC_005264.1 + 73784 0.8 0.182371
Target:  5'- gGGUAGGCCUCUUGGaagauGGCGCAGGGGu -3'
miRNA:   3'- gCUGUCCGGAGAACCg----UCGCGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 73751 0.7 0.632306
Target:  5'- gCGAauaAGGCCUUaucGCuGGCGCAGAGAa -3'
miRNA:   3'- -GCUg--UCCGGAGaacCG-UCGCGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 72747 0.7 0.622138
Target:  5'- uCGGCGGGCCUgUccgcugggaucUGGUuucuGGCGCAGAa- -3'
miRNA:   3'- -GCUGUCCGGAgA-----------ACCG----UCGCGUCUcu -5'
24402 5' -57.6 NC_005264.1 + 69782 0.71 0.571557
Target:  5'- gGGCggAGGCCgCaUGGCAGCGCAGcAGc -3'
miRNA:   3'- gCUG--UCCGGaGaACCGUCGCGUC-UCu -5'
24402 5' -57.6 NC_005264.1 + 48410 0.68 0.72184
Target:  5'- gCGAC-GGCCgagagCUUugugauagacgucGuGCAGCGCAGGGAc -3'
miRNA:   3'- -GCUGuCCGGa----GAA-------------C-CGUCGCGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 48069 0.7 0.642473
Target:  5'- gGACAucGGCCga---GCGGCGCAGGGAc -3'
miRNA:   3'- gCUGU--CCGGagaacCGUCGCGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 47563 0.66 0.856636
Target:  5'- uGACgaAGGCCUCgugccagauaUGGCu-CGCGGGGAc -3'
miRNA:   3'- gCUG--UCCGGAGa---------ACCGucGCGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 46325 0.66 0.848839
Target:  5'- -cAUGGGCCa-UUGGCaauacGGCGCGGAGGc -3'
miRNA:   3'- gcUGUCCGGagAACCG-----UCGCGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 41633 0.67 0.798236
Target:  5'- gCGGCuGGCCagaugcGGCAGCGCGGccGGGu -3'
miRNA:   3'- -GCUGuCCGGagaa--CCGUCGCGUC--UCU- -5'
24402 5' -57.6 NC_005264.1 + 41095 0.7 0.622138
Target:  5'- aGACuaGGGCCUCgagGGCGGCGCc---- -3'
miRNA:   3'- gCUG--UCCGGAGaa-CCGUCGCGucucu -5'
24402 5' -57.6 NC_005264.1 + 40221 0.66 0.824313
Target:  5'- gCGGCGGuaauucuucgcGCCUCcUGGCGuuaCGCGGAGGa -3'
miRNA:   3'- -GCUGUC-----------CGGAGaACCGUc--GCGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 39493 0.71 0.541661
Target:  5'- gGGCAGGCCUgCgcugUGGUGGaCGcCAGGGAc -3'
miRNA:   3'- gCUGUCCGGA-Ga---ACCGUC-GC-GUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 37582 0.66 0.848839
Target:  5'- gCGGCAaGUCUCgcGGCGGCcgcgGCGGGGGg -3'
miRNA:   3'- -GCUGUcCGGAGaaCCGUCG----CGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 35971 0.66 0.832671
Target:  5'- gCGAUucGCCUggaGGgGGCGCGGAGAg -3'
miRNA:   3'- -GCUGucCGGAgaaCCgUCGCGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 27164 0.72 0.502662
Target:  5'- cCGuGCAGGCCgUCUUcacGGCGGCGCAuAGGa -3'
miRNA:   3'- -GC-UGUCCGG-AGAA---CCGUCGCGUcUCU- -5'
24402 5' -57.6 NC_005264.1 + 24300 0.82 0.134551
Target:  5'- aCGGC-GGCCUCUgUGGCuacGCGCAGAGAg -3'
miRNA:   3'- -GCUGuCCGGAGA-ACCGu--CGCGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 19193 0.67 0.780097
Target:  5'- aCGGCAGGUUcggCUUGcccauGguGUGCAGGGAg -3'
miRNA:   3'- -GCUGUCCGGa--GAAC-----CguCGCGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 19094 0.66 0.832671
Target:  5'- aGcCAGGaCUgcacCgcGGCGGCGCGGAGAc -3'
miRNA:   3'- gCuGUCC-GGa---GaaCCGUCGCGUCUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.