miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24402 5' -57.6 NC_005264.1 + 4247 0.66 0.832671
Target:  5'- -uGCGGaGCCUCUUGccGCcGCGCAGcGAg -3'
miRNA:   3'- gcUGUC-CGGAGAAC--CGuCGCGUCuCU- -5'
24402 5' -57.6 NC_005264.1 + 102907 0.67 0.780097
Target:  5'- gCGACGcuGGUggaaCUCUUGGCcgagcuGCGCGGAGc -3'
miRNA:   3'- -GCUGU--CCG----GAGAACCGu-----CGCGUCUCu -5'
24402 5' -57.6 NC_005264.1 + 41633 0.67 0.798236
Target:  5'- gCGGCuGGCCagaugcGGCAGCGCGGccGGGu -3'
miRNA:   3'- -GCUGuCCGGagaa--CCGUCGCGUC--UCU- -5'
24402 5' -57.6 NC_005264.1 + 116421 0.67 0.807088
Target:  5'- gCGGCAGGUCgCUgggGGCgucuGGCcGCGGGGGc -3'
miRNA:   3'- -GCUGUCCGGaGAa--CCG----UCG-CGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 9929 0.67 0.807088
Target:  5'- -uGCGGGCUUUgcGGC-GCGCuGAGAg -3'
miRNA:   3'- gcUGUCCGGAGaaCCGuCGCGuCUCU- -5'
24402 5' -57.6 NC_005264.1 + 122702 0.67 0.807088
Target:  5'- gGGC-GGCCgUCUcGGCGGCGagacgaGGAGGa -3'
miRNA:   3'- gCUGuCCGG-AGAaCCGUCGCg-----UCUCU- -5'
24402 5' -57.6 NC_005264.1 + 123460 0.67 0.813191
Target:  5'- cCGACgucgucaucgucugAGGCCUC-UGGCuGCGCGauucugggcGGGAa -3'
miRNA:   3'- -GCUG--------------UCCGGAGaACCGuCGCGU---------CUCU- -5'
24402 5' -57.6 NC_005264.1 + 10745 0.67 0.815783
Target:  5'- cCGAC-GGCaugaUCgaucaggUGGUAGCGCAGAc- -3'
miRNA:   3'- -GCUGuCCGg---AGa------ACCGUCGCGUCUcu -5'
24402 5' -57.6 NC_005264.1 + 159248 0.66 0.824313
Target:  5'- gCGGCGGuaauucuucgcGCCUCcUGGCGuuaCGCGGAGGa -3'
miRNA:   3'- -GCUGUC-----------CGGAGaACCGUc--GCGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 19193 0.67 0.780097
Target:  5'- aCGGCAGGUUcggCUUGcccauGguGUGCAGGGAg -3'
miRNA:   3'- -GCUGUCCGGa--GAAC-----CguCGCGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 125622 0.67 0.770827
Target:  5'- cCGACAGGUCaac-GGCgAGCGCGuGGGAa -3'
miRNA:   3'- -GCUGUCCGGagaaCCG-UCGCGU-CUCU- -5'
24402 5' -57.6 NC_005264.1 + 128654 0.68 0.728708
Target:  5'- -aGCAGGCCagaUCUggucguuggggggGGCAGUGCAGAu- -3'
miRNA:   3'- gcUGUCCGG---AGAa------------CCGUCGCGUCUcu -5'
24402 5' -57.6 NC_005264.1 + 121526 0.76 0.307766
Target:  5'- uCGGCGGGCCUCgcgcgacuuCAGCGCGGGGGg -3'
miRNA:   3'- -GCUGUCCGGAGaacc-----GUCGCGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 27164 0.72 0.502662
Target:  5'- cCGuGCAGGCCgUCUUcacGGCGGCGCAuAGGa -3'
miRNA:   3'- -GC-UGUCCGG-AGAA---CCGUCGCGUcUCU- -5'
24402 5' -57.6 NC_005264.1 + 158520 0.71 0.541661
Target:  5'- gGGCAGGCCUgCgcugUGGUGGaCGcCAGGGAc -3'
miRNA:   3'- gCUGUCCGGA-Ga---ACCGUC-GC-GUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 69782 0.71 0.571557
Target:  5'- gGGCggAGGCCgCaUGGCAGCGCAGcAGc -3'
miRNA:   3'- gCUG--UCCGGaGaACCGUCGCGUC-UCu -5'
24402 5' -57.6 NC_005264.1 + 77267 0.7 0.608932
Target:  5'- cCGAUAcGGCCUUgggccuggaacgaaUUGGguGCGCGGcAGAu -3'
miRNA:   3'- -GCUGU-CCGGAG--------------AACCguCGCGUC-UCU- -5'
24402 5' -57.6 NC_005264.1 + 41095 0.7 0.622138
Target:  5'- aGACuaGGGCCUCgagGGCGGCGCc---- -3'
miRNA:   3'- gCUG--UCCGGAGaa-CCGUCGCGucucu -5'
24402 5' -57.6 NC_005264.1 + 48069 0.7 0.642473
Target:  5'- gGACAucGGCCga---GCGGCGCAGGGAc -3'
miRNA:   3'- gCUGU--CCGGagaacCGUCGCGUCUCU- -5'
24402 5' -57.6 NC_005264.1 + 48410 0.68 0.72184
Target:  5'- gCGAC-GGCCgagagCUUugugauagacgucGuGCAGCGCAGGGAc -3'
miRNA:   3'- -GCUGuCCGGa----GAA-------------C-CGUCGCGUCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.