Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24402 | 5' | -57.6 | NC_005264.1 | + | 9627 | 0.68 | 0.728708 |
Target: 5'- -aGCAGGCCagaUCUggucguuggggggGGCAGUGCAGAu- -3' miRNA: 3'- gcUGUCCGG---AGAa------------CCGUCGCGUCUcu -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 6595 | 0.67 | 0.770827 |
Target: 5'- cCGACAGGUCaac-GGCgAGCGCGuGGGAa -3' miRNA: 3'- -GCUGUCCGGagaaCCG-UCGCGU-CUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 135575 | 0.69 | 0.672895 |
Target: 5'- gGGCcaacaGGGCCUCUuccUGGCuacuagagAGCGCAGAa- -3' miRNA: 3'- gCUG-----UCCGGAGA---ACCG--------UCGCGUCUcu -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 77267 | 0.7 | 0.608932 |
Target: 5'- cCGAUAcGGCCUUgggccuggaacgaaUUGGguGCGCGGcAGAu -3' miRNA: 3'- -GCUGU-CCGGAG--------------AACCguCGCGUC-UCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 156609 | 0.66 | 0.848839 |
Target: 5'- gCGGCAaGUCUCgcGGCGGCcgcgGCGGGGGg -3' miRNA: 3'- -GCUGUcCGGAGaaCCGUCG----CGUCUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 46325 | 0.66 | 0.848839 |
Target: 5'- -cAUGGGCCa-UUGGCaauacGGCGCGGAGGc -3' miRNA: 3'- gcUGUCCGGagAACCG-----UCGCGUCUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 69782 | 0.71 | 0.571557 |
Target: 5'- gGGCggAGGCCgCaUGGCAGCGCAGcAGc -3' miRNA: 3'- gCUG--UCCGGaGaACCGUCGCGUC-UCu -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 41095 | 0.7 | 0.622138 |
Target: 5'- aGACuaGGGCCUCgagGGCGGCGCc---- -3' miRNA: 3'- gCUG--UCCGGAGaa-CCGUCGCGucucu -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 128654 | 0.68 | 0.728708 |
Target: 5'- -aGCAGGCCagaUCUggucguuggggggGGCAGUGCAGAu- -3' miRNA: 3'- gcUGUCCGG---AGAa------------CCGUCGCGUCUcu -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 125622 | 0.67 | 0.770827 |
Target: 5'- cCGACAGGUCaac-GGCgAGCGCGuGGGAa -3' miRNA: 3'- -GCUGUCCGGagaaCCG-UCGCGU-CUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 19193 | 0.67 | 0.780097 |
Target: 5'- aCGGCAGGUUcggCUUGcccauGguGUGCAGGGAg -3' miRNA: 3'- -GCUGUCCGGa--GAAC-----CguCGCGUCUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 102907 | 0.67 | 0.780097 |
Target: 5'- gCGACGcuGGUggaaCUCUUGGCcgagcuGCGCGGAGc -3' miRNA: 3'- -GCUGU--CCG----GAGAACCGu-----CGCGUCUCu -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 41633 | 0.67 | 0.798236 |
Target: 5'- gCGGCuGGCCagaugcGGCAGCGCGGccGGGu -3' miRNA: 3'- -GCUGuCCGGagaa--CCGUCGCGUC--UCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 116421 | 0.67 | 0.807088 |
Target: 5'- gCGGCAGGUCgCUgggGGCgucuGGCcGCGGGGGc -3' miRNA: 3'- -GCUGUCCGGaGAa--CCG----UCG-CGUCUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 10745 | 0.67 | 0.815783 |
Target: 5'- cCGAC-GGCaugaUCgaucaggUGGUAGCGCAGAc- -3' miRNA: 3'- -GCUGuCCGg---AGa------ACCGUCGCGUCUcu -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 159248 | 0.66 | 0.824313 |
Target: 5'- gCGGCGGuaauucuucgcGCCUCcUGGCGuuaCGCGGAGGa -3' miRNA: 3'- -GCUGUC-----------CGGAGaACCGUc--GCGUCUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 4247 | 0.66 | 0.832671 |
Target: 5'- -uGCGGaGCCUCUUGccGCcGCGCAGcGAg -3' miRNA: 3'- gcUGUC-CGGAGAAC--CGuCGCGUCuCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 19094 | 0.66 | 0.832671 |
Target: 5'- aGcCAGGaCUgcacCgcGGCGGCGCGGAGAc -3' miRNA: 3'- gCuGUCC-GGa---GaaCCGUCGCGUCUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 35971 | 0.66 | 0.832671 |
Target: 5'- gCGAUucGCCUggaGGgGGCGCGGAGAg -3' miRNA: 3'- -GCUGucCGGAgaaCCgUCGCGUCUCU- -5' |
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24402 | 5' | -57.6 | NC_005264.1 | + | 133732 | 0.66 | 0.832671 |
Target: 5'- cCGACAG-CC-CUU-GCGGCGCuGGGAg -3' miRNA: 3'- -GCUGUCcGGaGAAcCGUCGCGuCUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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