Results 41 - 49 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24402 | 5' | -57.6 | NC_005264.1 | + | 35971 | 0.66 | 0.832671 |
|
Target: 5'- gCGAUucGCCUggaGGgGGCGCGGAGAg -3' miRNA: 3'- -GCUGucCGGAgaaCCgUCGCGUCUCU- -5' |
|||||||
| 24402 | 5' | -57.6 | NC_005264.1 | + | 19094 | 0.66 | 0.832671 |
|
Target: 5'- aGcCAGGaCUgcacCgcGGCGGCGCGGAGAc -3' miRNA: 3'- gCuGUCC-GGa---GaaCCGUCGCGUCUCU- -5' |
|||||||
| 24402 | 5' | -57.6 | NC_005264.1 | + | 4247 | 0.66 | 0.832671 |
|
Target: 5'- -uGCGGaGCCUCUUGccGCcGCGCAGcGAg -3' miRNA: 3'- gcUGUC-CGGAGAAC--CGuCGCGUCuCU- -5' |
|||||||
| 24402 | 5' | -57.6 | NC_005264.1 | + | 159248 | 0.66 | 0.824313 |
|
Target: 5'- gCGGCGGuaauucuucgcGCCUCcUGGCGuuaCGCGGAGGa -3' miRNA: 3'- -GCUGUC-----------CGGAGaACCGUc--GCGUCUCU- -5' |
|||||||
| 24402 | 5' | -57.6 | NC_005264.1 | + | 123460 | 0.67 | 0.813191 |
|
Target: 5'- cCGACgucgucaucgucugAGGCCUC-UGGCuGCGCGauucugggcGGGAa -3' miRNA: 3'- -GCUG--------------UCCGGAGaACCGuCGCGU---------CUCU- -5' |
|||||||
| 24402 | 5' | -57.6 | NC_005264.1 | + | 122702 | 0.67 | 0.807088 |
|
Target: 5'- gGGC-GGCCgUCUcGGCGGCGagacgaGGAGGa -3' miRNA: 3'- gCUGuCCGG-AGAaCCGUCGCg-----UCUCU- -5' |
|||||||
| 24402 | 5' | -57.6 | NC_005264.1 | + | 9929 | 0.67 | 0.807088 |
|
Target: 5'- -uGCGGGCUUUgcGGC-GCGCuGAGAg -3' miRNA: 3'- gcUGUCCGGAGaaCCGuCGCGuCUCU- -5' |
|||||||
| 24402 | 5' | -57.6 | NC_005264.1 | + | 116421 | 0.67 | 0.807088 |
|
Target: 5'- gCGGCAGGUCgCUgggGGCgucuGGCcGCGGGGGc -3' miRNA: 3'- -GCUGUCCGGaGAa--CCG----UCG-CGUCUCU- -5' |
|||||||
| 24402 | 5' | -57.6 | NC_005264.1 | + | 24300 | 0.82 | 0.134551 |
|
Target: 5'- aCGGC-GGCCUCUgUGGCuacGCGCAGAGAg -3' miRNA: 3'- -GCUGuCCGGAGA-ACCGu--CGCGUCUCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home