miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24403 3' -61.1 NC_005264.1 + 66691 0.65 0.733146
Target:  5'- -cGGCGcCGGGCGGGgggcguacuacgugUCGCcggggagcaacaAGCGCCGGc -3'
miRNA:   3'- cuCCGC-GCUCGUCU--------------GGCG------------UCGUGGCC- -5'
24403 3' -61.1 NC_005264.1 + 62925 0.66 0.726521
Target:  5'- --cGCGCGGGCuugcgcGGCCGCAagccGCGCCu- -3'
miRNA:   3'- cucCGCGCUCGu-----CUGGCGU----CGUGGcc -5'
24403 3' -61.1 NC_005264.1 + 105590 0.66 0.726521
Target:  5'- aGGGCuCGAGCgccucaAGACCGUGGUGCgUGGg -3'
miRNA:   3'- cUCCGcGCUCG------UCUGGCGUCGUG-GCC- -5'
24403 3' -61.1 NC_005264.1 + 16405 0.66 0.726521
Target:  5'- --uGCGCaAGuCAGAgCCGCGGCAUCGa -3'
miRNA:   3'- cucCGCGcUC-GUCU-GGCGUCGUGGCc -5'
24403 3' -61.1 NC_005264.1 + 36418 0.66 0.724621
Target:  5'- uGAGGCGCcccaaguaccuGCAGGCCGCGGagaCGa -3'
miRNA:   3'- -CUCCGCGcu---------CGUCUGGCGUCgugGCc -5'
24403 3' -61.1 NC_005264.1 + 100026 0.66 0.716992
Target:  5'- aAGGcCGCG-GCGGcGCUGCuGCGuCCGGu -3'
miRNA:   3'- cUCC-GCGCuCGUC-UGGCGuCGU-GGCC- -5'
24403 3' -61.1 NC_005264.1 + 40976 0.66 0.716992
Target:  5'- -cGGCGCGAGCGcGACCgGCccucCGCCa- -3'
miRNA:   3'- cuCCGCGCUCGU-CUGG-CGuc--GUGGcc -5'
24403 3' -61.1 NC_005264.1 + 82254 0.66 0.716992
Target:  5'- -cGGgGCucGC-GACagGCGGCACCGGa -3'
miRNA:   3'- cuCCgCGcuCGuCUGg-CGUCGUGGCC- -5'
24403 3' -61.1 NC_005264.1 + 83233 0.66 0.716992
Target:  5'- --cGCGUGGGCgucuAGGCCGCcgcugauGCGCUGGc -3'
miRNA:   3'- cucCGCGCUCG----UCUGGCGu------CGUGGCC- -5'
24403 3' -61.1 NC_005264.1 + 30395 0.66 0.716992
Target:  5'- -cGGCgGCG-GCGG-UCGC-GCGCCGGu -3'
miRNA:   3'- cuCCG-CGCuCGUCuGGCGuCGUGGCC- -5'
24403 3' -61.1 NC_005264.1 + 12438 0.66 0.716992
Target:  5'- gGAGGCGCGGuGCGGuCUaaaGGC-CCGGc -3'
miRNA:   3'- -CUCCGCGCU-CGUCuGGcg-UCGuGGCC- -5'
24403 3' -61.1 NC_005264.1 + 149422 0.66 0.716992
Target:  5'- -cGGCgGCG-GCGG-UCGC-GCGCCGGu -3'
miRNA:   3'- cuCCG-CGCuCGUCuGGCGuCGUGGCC- -5'
24403 3' -61.1 NC_005264.1 + 124757 0.66 0.716992
Target:  5'- gGGGGCcaaggaagcacgGCGGGUAGGCauugugagaGCGGCGCCu- -3'
miRNA:   3'- -CUCCG------------CGCUCGUCUGg--------CGUCGUGGcc -5'
24403 3' -61.1 NC_005264.1 + 64681 0.66 0.716992
Target:  5'- uGGGCcugccgGCGGGCAGGCCGUgcucGC-CCGa -3'
miRNA:   3'- cUCCG------CGCUCGUCUGGCGu---CGuGGCc -5'
24403 3' -61.1 NC_005264.1 + 154605 0.66 0.716992
Target:  5'- aGAGGgGgGAGCu-GCUGCGGCuuCGGc -3'
miRNA:   3'- -CUCCgCgCUCGucUGGCGUCGugGCC- -5'
24403 3' -61.1 NC_005264.1 + 153160 0.66 0.716992
Target:  5'- cGAGGCGCGAGCccgccucccccaAGGCCucGCuagacgaucuGCACUGc -3'
miRNA:   3'- -CUCCGCGCUCG------------UCUGG--CGu---------CGUGGCc -5'
24403 3' -61.1 NC_005264.1 + 131465 0.66 0.716992
Target:  5'- gGAGGCGCGGuGCGGuCUaaaGGC-CCGGc -3'
miRNA:   3'- -CUCCGCGCU-CGUCuGGcg-UCGuGGCC- -5'
24403 3' -61.1 NC_005264.1 + 146748 0.66 0.716992
Target:  5'- cGAGG-GCG-GCGGACCcggcaacaGCAaGCGCCGc -3'
miRNA:   3'- -CUCCgCGCuCGUCUGG--------CGU-CGUGGCc -5'
24403 3' -61.1 NC_005264.1 + 160003 0.66 0.716992
Target:  5'- -cGGCGCGAGCGcGACCgGCccucCGCCa- -3'
miRNA:   3'- cuCCGCGCUCGU-CUGG-CGuc--GUGGcc -5'
24403 3' -61.1 NC_005264.1 + 34133 0.66 0.716992
Target:  5'- cGAGGCGCGAGCccgccucccccaAGGCCucGCuagacgaucuGCACUGc -3'
miRNA:   3'- -CUCCGCGCUCG------------UCUGG--CGu---------CGUGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.