miRNA display CGI


Results 1 - 20 of 162 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24403 3' -61.1 NC_005264.1 + 66691 0.65 0.733146
Target:  5'- -cGGCGcCGGGCGGGgggcguacuacgugUCGCcggggagcaacaAGCGCCGGc -3'
miRNA:   3'- cuCCGC-GCUCGUCU--------------GGCG------------UCGUGGCC- -5'
24403 3' -61.1 NC_005264.1 + 145280 0.66 0.688037
Target:  5'- -uGGCaCGGGgAGGCCGCGGUcuaggcuuCCGGu -3'
miRNA:   3'- cuCCGcGCUCgUCUGGCGUCGu-------GGCC- -5'
24403 3' -61.1 NC_005264.1 + 124722 0.66 0.697742
Target:  5'- aGAGcGCGCGGGCAa--CGCcuGGCGgCGGa -3'
miRNA:   3'- -CUC-CGCGCUCGUcugGCG--UCGUgGCC- -5'
24403 3' -61.1 NC_005264.1 + 162738 0.66 0.688037
Target:  5'- aAGGaaacuCGAGCGGcCCGCGuGCGCCGa -3'
miRNA:   3'- cUCCgc---GCUCGUCuGGCGU-CGUGGCc -5'
24403 3' -61.1 NC_005264.1 + 61777 0.66 0.716036
Target:  5'- -uGGCGacccugaucgacuCGAGCAGcuccaccggGCCGCGGgcauCGCCGGg -3'
miRNA:   3'- cuCCGC-------------GCUCGUC---------UGGCGUC----GUGGCC- -5'
24403 3' -61.1 NC_005264.1 + 40923 0.66 0.688037
Target:  5'- -cGGCGCGGGCuagcuucugaacAGAcCCGCAuCGCgCGGc -3'
miRNA:   3'- cuCCGCGCUCG------------UCU-GGCGUcGUG-GCC- -5'
24403 3' -61.1 NC_005264.1 + 161153 0.66 0.675357
Target:  5'- aGGGUGUGcGCugAGACCGCacgagagaacaaaaGGCGCUGGc -3'
miRNA:   3'- cUCCGCGCuCG--UCUGGCG--------------UCGUGGCC- -5'
24403 3' -61.1 NC_005264.1 + 64681 0.66 0.716992
Target:  5'- uGGGCcugccgGCGGGCAGGCCGUgcucGC-CCGa -3'
miRNA:   3'- cUCCG------CGCUCGUCUGGCGu---CGuGGCc -5'
24403 3' -61.1 NC_005264.1 + 146748 0.66 0.716992
Target:  5'- cGAGG-GCG-GCGGACCcggcaacaGCAaGCGCCGc -3'
miRNA:   3'- -CUCCgCGCuCGUCUGG--------CGU-CGUGGCc -5'
24403 3' -61.1 NC_005264.1 + 40790 0.66 0.697742
Target:  5'- -cGGCGCcgaGAGCGGAgCCGCuuGcCGCgGGg -3'
miRNA:   3'- cuCCGCG---CUCGUCU-GGCGu-C-GUGgCC- -5'
24403 3' -61.1 NC_005264.1 + 152957 0.66 0.678289
Target:  5'- aGGGC-UGGGaAGGCCGUGGCgcGCCGGg -3'
miRNA:   3'- cUCCGcGCUCgUCUGGCGUCG--UGGCC- -5'
24403 3' -61.1 NC_005264.1 + 26381 0.66 0.707397
Target:  5'- aGAGGaguCGCGAGgAGaagcaaGCCGUAGcCGCCGa -3'
miRNA:   3'- -CUCC---GCGCUCgUC------UGGCGUC-GUGGCc -5'
24403 3' -61.1 NC_005264.1 + 154605 0.66 0.716992
Target:  5'- aGAGGgGgGAGCu-GCUGCGGCuuCGGc -3'
miRNA:   3'- -CUCCgCgCUCGucUGGCGUCGugGCC- -5'
24403 3' -61.1 NC_005264.1 + 131465 0.66 0.716992
Target:  5'- gGAGGCGCGGuGCGGuCUaaaGGC-CCGGc -3'
miRNA:   3'- -CUCCGCGCU-CGUCuGGcg-UCGuGGCC- -5'
24403 3' -61.1 NC_005264.1 + 47244 0.66 0.707397
Target:  5'- -uGGCGCaGAGCAGGCCcCAcuccuCCGGa -3'
miRNA:   3'- cuCCGCG-CUCGUCUGGcGUcgu--GGCC- -5'
24403 3' -61.1 NC_005264.1 + 160003 0.66 0.716992
Target:  5'- -cGGCGCGAGCGcGACCgGCccucCGCCa- -3'
miRNA:   3'- cuCCGCGCUCGU-CUGG-CGuc--GUGGcc -5'
24403 3' -61.1 NC_005264.1 + 19973 0.66 0.687064
Target:  5'- -cGGCGCGAGuCGacgcaacaaaccGACCGCGcucgcucGCAuCCGGu -3'
miRNA:   3'- cuCCGCGCUC-GU------------CUGGCGU-------CGU-GGCC- -5'
24403 3' -61.1 NC_005264.1 + 153160 0.66 0.716992
Target:  5'- cGAGGCGCGAGCccgccucccccaAGGCCucGCuagacgaucuGCACUGc -3'
miRNA:   3'- -CUCCGCGCUCG------------UCUGG--CGu---------CGUGGCc -5'
24403 3' -61.1 NC_005264.1 + 36529 0.66 0.688037
Target:  5'- cGGGCGCagGAGCcaucGGCCGC-GCGCCc- -3'
miRNA:   3'- cUCCGCG--CUCGu---CUGGCGuCGUGGcc -5'
24403 3' -61.1 NC_005264.1 + 4495 0.66 0.707397
Target:  5'- aGGGGCGCGGuGCGG-CCGCuuguGUuCCGc -3'
miRNA:   3'- -CUCCGCGCU-CGUCuGGCGu---CGuGGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.