miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24403 3' -61.1 NC_005264.1 + 111735 1.09 0.001105
Target:  5'- cGAGGCGCGAGCAGACCGCAGCACCGGc -3'
miRNA:   3'- -CUCCGCGCUCGUCUGGCGUCGUGGCC- -5'
24403 3' -61.1 NC_005264.1 + 94391 0.78 0.163753
Target:  5'- gGAGGCccuccGCGcGCAGACCGCGGCGCgGa -3'
miRNA:   3'- -CUCCG-----CGCuCGUCUGGCGUCGUGgCc -5'
24403 3' -61.1 NC_005264.1 + 120124 0.77 0.176166
Target:  5'- uGGGGCGCagcGAGCAGGaggaCGgAGCGCCGGc -3'
miRNA:   3'- -CUCCGCG---CUCGUCUg---GCgUCGUGGCC- -5'
24403 3' -61.1 NC_005264.1 + 120401 0.76 0.198717
Target:  5'- cGA-GCGCGAGU--GCCGCAGCGCCGa -3'
miRNA:   3'- -CUcCGCGCUCGucUGGCGUCGUGGCc -5'
24403 3' -61.1 NC_005264.1 + 104162 0.76 0.208421
Target:  5'- aGAGGC-CGGGUgcGCCuGCAGCGCCGGa -3'
miRNA:   3'- -CUCCGcGCUCGucUGG-CGUCGUGGCC- -5'
24403 3' -61.1 NC_005264.1 + 155221 0.76 0.218531
Target:  5'- uGGGCGaaaGAGCAGACCGCAuGCGCg-- -3'
miRNA:   3'- cUCCGCg--CUCGUCUGGCGU-CGUGgcc -5'
24403 3' -61.1 NC_005264.1 + 19423 0.76 0.218531
Target:  5'- cGAGGCGcCGGGUGuGGCCGCGGgGCgCGGg -3'
miRNA:   3'- -CUCCGC-GCUCGU-CUGGCGUCgUG-GCC- -5'
24403 3' -61.1 NC_005264.1 + 36194 0.76 0.218531
Target:  5'- uGGGCGaaaGAGCAGACCGCAuGCGCg-- -3'
miRNA:   3'- cUCCGCg--CUCGUCUGGCGU-CGUGgcc -5'
24403 3' -61.1 NC_005264.1 + 56394 0.75 0.23448
Target:  5'- uGAGGCGCGAcgaucGCAuaucGAgCGCGGCGCCGu -3'
miRNA:   3'- -CUCCGCGCU-----CGU----CUgGCGUCGUGGCc -5'
24403 3' -61.1 NC_005264.1 + 130971 0.75 0.24001
Target:  5'- aAGGCGUGcGCcGACCGCgaGGCGCUGGa -3'
miRNA:   3'- cUCCGCGCuCGuCUGGCG--UCGUGGCC- -5'
24403 3' -61.1 NC_005264.1 + 50590 0.74 0.263223
Target:  5'- -cGGCGCuGAGCAG-CC-CGGCGCUGGa -3'
miRNA:   3'- cuCCGCG-CUCGUCuGGcGUCGUGGCC- -5'
24403 3' -61.1 NC_005264.1 + 87747 0.74 0.275497
Target:  5'- -cGGCGCcGGCGccuGCCGCAGCGCCGc -3'
miRNA:   3'- cuCCGCGcUCGUc--UGGCGUCGUGGCc -5'
24403 3' -61.1 NC_005264.1 + 94577 0.73 0.301412
Target:  5'- aGAGGCGgcaGcAGCAGGCCGCccgcGGCGCgGGc -3'
miRNA:   3'- -CUCCGCg--C-UCGUCUGGCG----UCGUGgCC- -5'
24403 3' -61.1 NC_005264.1 + 106574 0.73 0.301412
Target:  5'- aAGGCGgugGAGCAGACCGCAaaccGCAUgGGc -3'
miRNA:   3'- cUCCGCg--CUCGUCUGGCGU----CGUGgCC- -5'
24403 3' -61.1 NC_005264.1 + 140056 0.73 0.315059
Target:  5'- aGGGGCGUGAGCAGugUcGCcGCGCCc- -3'
miRNA:   3'- -CUCCGCGCUCGUCugG-CGuCGUGGcc -5'
24403 3' -61.1 NC_005264.1 + 94388 0.72 0.341522
Target:  5'- -uGGUGUcgucccucgucuauGAuCAGGCCGCGGCGCCGGu -3'
miRNA:   3'- cuCCGCG--------------CUcGUCUGGCGUCGUGGCC- -5'
24403 3' -61.1 NC_005264.1 + 90650 0.72 0.343737
Target:  5'- aGGGCGCGcGgAGACCGCAuuGCUGGc -3'
miRNA:   3'- cUCCGCGCuCgUCUGGCGUcgUGGCC- -5'
24403 3' -61.1 NC_005264.1 + 109635 0.72 0.36645
Target:  5'- gGGGGCGCGAcgguuGCAacUCGCGGCcCCGGa -3'
miRNA:   3'- -CUCCGCGCU-----CGUcuGGCGUCGuGGCC- -5'
24403 3' -61.1 NC_005264.1 + 101404 0.72 0.36645
Target:  5'- -cGGCGCcgagGAGCGGGCCGCcgaaAGCAuacgagacCCGGa -3'
miRNA:   3'- cuCCGCG----CUCGUCUGGCG----UCGU--------GGCC- -5'
24403 3' -61.1 NC_005264.1 + 62455 0.72 0.374247
Target:  5'- cGGGGCGC-AGCAGcggcauCCGCAGCAUUGc -3'
miRNA:   3'- -CUCCGCGcUCGUCu-----GGCGUCGUGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.