miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24403 5' -59.5 NC_005264.1 + 93257 0.66 0.769545
Target:  5'- aAGCGGG-CUAGGUGGCgCcAG-GGCc- -3'
miRNA:   3'- -UCGUCCaGAUCCGCCG-GaUCuCCGcu -5'
24403 5' -59.5 NC_005264.1 + 37583 0.66 0.760242
Target:  5'- cGGCAaGUCUcgcGGCGGCCgc--GGCGGg -3'
miRNA:   3'- -UCGUcCAGAu--CCGCCGGaucuCCGCU- -5'
24403 5' -59.5 NC_005264.1 + 156610 0.66 0.760242
Target:  5'- cGGCAaGUCUcgcGGCGGCCgc--GGCGGg -3'
miRNA:   3'- -UCGUcCAGAu--CCGCCGGaucuCCGCU- -5'
24403 5' -59.5 NC_005264.1 + 146906 0.66 0.750831
Target:  5'- gAGgGGGUCUacuGGGUGGgCUAucGGGGCa- -3'
miRNA:   3'- -UCgUCCAGA---UCCGCCgGAU--CUCCGcu -5'
24403 5' -59.5 NC_005264.1 + 124088 0.66 0.741318
Target:  5'- uGGCAGGggucgCaAGGCGGCCagcccguccggGGAGGgGu -3'
miRNA:   3'- -UCGUCCa----GaUCCGCCGGa----------UCUCCgCu -5'
24403 5' -59.5 NC_005264.1 + 5061 0.66 0.741318
Target:  5'- uGGCAGGggucgCaAGGCGGCCagcccguccggGGAGGgGu -3'
miRNA:   3'- -UCGUCCa----GaUCCGCCGGa----------UCUCCgCu -5'
24403 5' -59.5 NC_005264.1 + 152364 0.67 0.722025
Target:  5'- uAGCAGGUUccgaccGGGaucCGGCCUAucGGCGGc -3'
miRNA:   3'- -UCGUCCAGa-----UCC---GCCGGAUcuCCGCU- -5'
24403 5' -59.5 NC_005264.1 + 67760 0.67 0.722025
Target:  5'- cGCAGGUCgcaguuGcGUGGCUUGGGGuCGAg -3'
miRNA:   3'- uCGUCCAGau----C-CGCCGGAUCUCcGCU- -5'
24403 5' -59.5 NC_005264.1 + 33337 0.67 0.722025
Target:  5'- uAGCAGGUUccgaccGGGaucCGGCCUAucGGCGGc -3'
miRNA:   3'- -UCGUCCAGa-----UCC---GCCGGAUcuCCGCU- -5'
24403 5' -59.5 NC_005264.1 + 135939 0.67 0.712262
Target:  5'- uGGCAc----AGGCGGCC-GGGGGCGAg -3'
miRNA:   3'- -UCGUccagaUCCGCCGGaUCUCCGCU- -5'
24403 5' -59.5 NC_005264.1 + 38333 0.67 0.686593
Target:  5'- uGGCGGGcccuggccgugaugCUGGGCGGC---GGGGCGGu -3'
miRNA:   3'- -UCGUCCa-------------GAUCCGCCGgauCUCCGCU- -5'
24403 5' -59.5 NC_005264.1 + 157360 0.67 0.686593
Target:  5'- uGGCGGGcccuggccgugaugCUGGGCGGC---GGGGCGGu -3'
miRNA:   3'- -UCGUCCa-------------GAUCCGCCGgauCUCCGCU- -5'
24403 5' -59.5 NC_005264.1 + 120490 0.67 0.67264
Target:  5'- uGCGcGGagUAGGUGGC--GGGGGCGAg -3'
miRNA:   3'- uCGU-CCagAUCCGCCGgaUCUCCGCU- -5'
24403 5' -59.5 NC_005264.1 + 43389 0.67 0.67264
Target:  5'- cGUGaGUCUguGGGCGGCCUGGGcaGCGAg -3'
miRNA:   3'- uCGUcCAGA--UCCGCCGGAUCUc-CGCU- -5'
24403 5' -59.5 NC_005264.1 + 605 0.68 0.662634
Target:  5'- cAGCgAGGcgaCUAcGGUGGCguucgCUGGAGGCGAc -3'
miRNA:   3'- -UCG-UCCa--GAU-CCGCCG-----GAUCUCCGCU- -5'
24403 5' -59.5 NC_005264.1 + 50303 0.68 0.662634
Target:  5'- -aCAGGUCggcGGUuacGGCCUGGAGccGCGAg -3'
miRNA:   3'- ucGUCCAGau-CCG---CCGGAUCUC--CGCU- -5'
24403 5' -59.5 NC_005264.1 + 45182 0.68 0.661632
Target:  5'- cAGCGaacGGUCUggcaguaacagcgAGGCGGacgAGAGGCGGc -3'
miRNA:   3'- -UCGU---CCAGA-------------UCCGCCggaUCUCCGCU- -5'
24403 5' -59.5 NC_005264.1 + 124313 0.69 0.59236
Target:  5'- cGGCGGGgc--GGCGGCUgacccguGGGGCGGg -3'
miRNA:   3'- -UCGUCCagauCCGCCGGau-----CUCCGCU- -5'
24403 5' -59.5 NC_005264.1 + 5286 0.69 0.59236
Target:  5'- cGGCGGGgc--GGCGGCUgacccguGGGGCGGg -3'
miRNA:   3'- -UCGUCCagauCCGCCGGau-----CUCCGCU- -5'
24403 5' -59.5 NC_005264.1 + 128686 0.69 0.582377
Target:  5'- uGCAGaucGUCUAGcGaGGCCUugggGGAGGCGGg -3'
miRNA:   3'- uCGUC---CAGAUC-CgCCGGA----UCUCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.