miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24403 5' -59.5 NC_005264.1 + 128686 0.69 0.582377
Target:  5'- uGCAGaucGUCUAGcGaGGCCUugggGGAGGCGGg -3'
miRNA:   3'- uCGUC---CAGAUC-CgCCGGA----UCUCCGCU- -5'
24403 5' -59.5 NC_005264.1 + 162315 0.69 0.551676
Target:  5'- cGCGGGUCUGaucGGuCGGCCUgggccacGGAGG-GAg -3'
miRNA:   3'- uCGUCCAGAU---CC-GCCGGA-------UCUCCgCU- -5'
24403 5' -59.5 NC_005264.1 + 43288 0.69 0.551676
Target:  5'- cGCGGGUCUGaucGGuCGGCCUgggccacGGAGG-GAg -3'
miRNA:   3'- uCGUCCAGAU---CC-GCCGGA-------UCUCCgCU- -5'
24403 5' -59.5 NC_005264.1 + 20251 0.7 0.542851
Target:  5'- gGGCAGGgguugcGGcGCGGCCUcgcGGAGGgGAc -3'
miRNA:   3'- -UCGUCCaga---UC-CGCCGGA---UCUCCgCU- -5'
24403 5' -59.5 NC_005264.1 + 80347 0.71 0.44874
Target:  5'- cGCGGGUC-GGGuCGG-UUGGAGGCGGu -3'
miRNA:   3'- uCGUCCAGaUCC-GCCgGAUCUCCGCU- -5'
24403 5' -59.5 NC_005264.1 + 3631 0.72 0.422279
Target:  5'- gGGCGGGguggggguuUCUgggAGGCGGUuugagCUGGGGGCGAc -3'
miRNA:   3'- -UCGUCC---------AGA---UCCGCCG-----GAUCUCCGCU- -5'
24403 5' -59.5 NC_005264.1 + 129504 0.75 0.291607
Target:  5'- cGCAGGguuuGGCGGCgCcGGAGGCGAc -3'
miRNA:   3'- uCGUCCagauCCGCCG-GaUCUCCGCU- -5'
24403 5' -59.5 NC_005264.1 + 157240 0.75 0.278495
Target:  5'- cGUGGGUCUucguGGCGGCCcucggcgcguUGGAGGUGGu -3'
miRNA:   3'- uCGUCCAGAu---CCGCCGG----------AUCUCCGCU- -5'
24403 5' -59.5 NC_005264.1 + 144542 0.76 0.241979
Target:  5'- gGGCGGGUcCUAGGCauucccCCUGGGGGCGGu -3'
miRNA:   3'- -UCGUCCA-GAUCCGcc----GGAUCUCCGCU- -5'
24403 5' -59.5 NC_005264.1 + 116422 0.78 0.180921
Target:  5'- cGGCAGGUCgcuggGGGCgucuGGCCgcGGGGGCGAc -3'
miRNA:   3'- -UCGUCCAGa----UCCG----CCGGa-UCUCCGCU- -5'
24403 5' -59.5 NC_005264.1 + 111770 1 0.006017
Target:  5'- aAGCAGG-CUAGGCGGCCUAGAGGCGAc -3'
miRNA:   3'- -UCGUCCaGAUCCGCCGGAUCUCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.