Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24403 | 5' | -59.5 | NC_005264.1 | + | 605 | 0.68 | 0.662634 |
Target: 5'- cAGCgAGGcgaCUAcGGUGGCguucgCUGGAGGCGAc -3' miRNA: 3'- -UCG-UCCa--GAU-CCGCCG-----GAUCUCCGCU- -5' |
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24403 | 5' | -59.5 | NC_005264.1 | + | 3631 | 0.72 | 0.422279 |
Target: 5'- gGGCGGGguggggguuUCUgggAGGCGGUuugagCUGGGGGCGAc -3' miRNA: 3'- -UCGUCC---------AGA---UCCGCCG-----GAUCUCCGCU- -5' |
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24403 | 5' | -59.5 | NC_005264.1 | + | 5061 | 0.66 | 0.741318 |
Target: 5'- uGGCAGGggucgCaAGGCGGCCagcccguccggGGAGGgGu -3' miRNA: 3'- -UCGUCCa----GaUCCGCCGGa----------UCUCCgCu -5' |
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24403 | 5' | -59.5 | NC_005264.1 | + | 5286 | 0.69 | 0.59236 |
Target: 5'- cGGCGGGgc--GGCGGCUgacccguGGGGCGGg -3' miRNA: 3'- -UCGUCCagauCCGCCGGau-----CUCCGCU- -5' |
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24403 | 5' | -59.5 | NC_005264.1 | + | 9659 | 0.69 | 0.582377 |
Target: 5'- uGCAGaucGUCUAGcGaGGCCUugggGGAGGCGGg -3' miRNA: 3'- uCGUC---CAGAUC-CgCCGGA----UCUCCGCU- -5' |
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24403 | 5' | -59.5 | NC_005264.1 | + | 20251 | 0.7 | 0.542851 |
Target: 5'- gGGCAGGgguugcGGcGCGGCCUcgcGGAGGgGAc -3' miRNA: 3'- -UCGUCCaga---UC-CGCCGGA---UCUCCgCU- -5' |
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24403 | 5' | -59.5 | NC_005264.1 | + | 33337 | 0.67 | 0.722025 |
Target: 5'- uAGCAGGUUccgaccGGGaucCGGCCUAucGGCGGc -3' miRNA: 3'- -UCGUCCAGa-----UCC---GCCGGAUcuCCGCU- -5' |
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24403 | 5' | -59.5 | NC_005264.1 | + | 37583 | 0.66 | 0.760242 |
Target: 5'- cGGCAaGUCUcgcGGCGGCCgc--GGCGGg -3' miRNA: 3'- -UCGUcCAGAu--CCGCCGGaucuCCGCU- -5' |
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24403 | 5' | -59.5 | NC_005264.1 | + | 38333 | 0.67 | 0.686593 |
Target: 5'- uGGCGGGcccuggccgugaugCUGGGCGGC---GGGGCGGu -3' miRNA: 3'- -UCGUCCa-------------GAUCCGCCGgauCUCCGCU- -5' |
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24403 | 5' | -59.5 | NC_005264.1 | + | 43288 | 0.69 | 0.551676 |
Target: 5'- cGCGGGUCUGaucGGuCGGCCUgggccacGGAGG-GAg -3' miRNA: 3'- uCGUCCAGAU---CC-GCCGGA-------UCUCCgCU- -5' |
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24403 | 5' | -59.5 | NC_005264.1 | + | 43389 | 0.67 | 0.67264 |
Target: 5'- cGUGaGUCUguGGGCGGCCUGGGcaGCGAg -3' miRNA: 3'- uCGUcCAGA--UCCGCCGGAUCUc-CGCU- -5' |
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24403 | 5' | -59.5 | NC_005264.1 | + | 45182 | 0.68 | 0.661632 |
Target: 5'- cAGCGaacGGUCUggcaguaacagcgAGGCGGacgAGAGGCGGc -3' miRNA: 3'- -UCGU---CCAGA-------------UCCGCCggaUCUCCGCU- -5' |
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24403 | 5' | -59.5 | NC_005264.1 | + | 50303 | 0.68 | 0.662634 |
Target: 5'- -aCAGGUCggcGGUuacGGCCUGGAGccGCGAg -3' miRNA: 3'- ucGUCCAGau-CCG---CCGGAUCUC--CGCU- -5' |
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24403 | 5' | -59.5 | NC_005264.1 | + | 67760 | 0.67 | 0.722025 |
Target: 5'- cGCAGGUCgcaguuGcGUGGCUUGGGGuCGAg -3' miRNA: 3'- uCGUCCAGau----C-CGCCGGAUCUCcGCU- -5' |
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24403 | 5' | -59.5 | NC_005264.1 | + | 80347 | 0.71 | 0.44874 |
Target: 5'- cGCGGGUC-GGGuCGG-UUGGAGGCGGu -3' miRNA: 3'- uCGUCCAGaUCC-GCCgGAUCUCCGCU- -5' |
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24403 | 5' | -59.5 | NC_005264.1 | + | 93257 | 0.66 | 0.769545 |
Target: 5'- aAGCGGG-CUAGGUGGCgCcAG-GGCc- -3' miRNA: 3'- -UCGUCCaGAUCCGCCG-GaUCuCCGcu -5' |
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24403 | 5' | -59.5 | NC_005264.1 | + | 111770 | 1 | 0.006017 |
Target: 5'- aAGCAGG-CUAGGCGGCCUAGAGGCGAc -3' miRNA: 3'- -UCGUCCaGAUCCGCCGGAUCUCCGCU- -5' |
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24403 | 5' | -59.5 | NC_005264.1 | + | 116422 | 0.78 | 0.180921 |
Target: 5'- cGGCAGGUCgcuggGGGCgucuGGCCgcGGGGGCGAc -3' miRNA: 3'- -UCGUCCAGa----UCCG----CCGGa-UCUCCGCU- -5' |
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24403 | 5' | -59.5 | NC_005264.1 | + | 120490 | 0.67 | 0.67264 |
Target: 5'- uGCGcGGagUAGGUGGC--GGGGGCGAg -3' miRNA: 3'- uCGU-CCagAUCCGCCGgaUCUCCGCU- -5' |
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24403 | 5' | -59.5 | NC_005264.1 | + | 124088 | 0.66 | 0.741318 |
Target: 5'- uGGCAGGggucgCaAGGCGGCCagcccguccggGGAGGgGu -3' miRNA: 3'- -UCGUCCa----GaUCCGCCGGa----------UCUCCgCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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