miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24404 5' -55.1 NC_005264.1 + 24671 0.66 0.925653
Target:  5'- aGGCagGCCGGaAGCcGCCaccucgGAAACGCCg -3'
miRNA:   3'- cUCG--CGGCUcUCGaUGGa-----CUUUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 124037 0.66 0.925653
Target:  5'- -cGCGCCG-GGGUcGCCgcgGAGuACGUCa -3'
miRNA:   3'- cuCGCGGCuCUCGaUGGa--CUU-UGCGG- -5'
24404 5' -55.1 NC_005264.1 + 52196 0.66 0.920134
Target:  5'- -uGUGCUGAGGGC--CgUGggGCGCg -3'
miRNA:   3'- cuCGCGGCUCUCGauGgACuuUGCGg -5'
24404 5' -55.1 NC_005264.1 + 29111 0.66 0.920134
Target:  5'- cAGCGCCGcaAGGGCUgucguGCCaGAGGCaGCa -3'
miRNA:   3'- cUCGCGGC--UCUCGA-----UGGaCUUUG-CGg -5'
24404 5' -55.1 NC_005264.1 + 128975 0.66 0.920134
Target:  5'- aGAGaCGCCggcGAGGGaCUGCCgGAcccgugcggcGAUGCCg -3'
miRNA:   3'- -CUC-GCGG---CUCUC-GAUGGaCU----------UUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 6287 0.66 0.919568
Target:  5'- uAGCGCCGAGcucucccAGCUGCaCUu--GCGCg -3'
miRNA:   3'- cUCGCGGCUC-------UCGAUG-GAcuuUGCGg -5'
24404 5' -55.1 NC_005264.1 + 9949 0.67 0.914374
Target:  5'- aGAGaCGCCggcGAGGGaCUGCCgGAcccgugggcGAUGCCg -3'
miRNA:   3'- -CUC-GCGG---CUCUC-GAUGGaCU---------UUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 137117 0.67 0.914374
Target:  5'- -cGCGaCCGAGuacgcaccGCUGCCgcccGCGCCa -3'
miRNA:   3'- cuCGC-GGCUCu-------CGAUGGacuuUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 12142 0.67 0.914374
Target:  5'- --cCGCCGAGAGCccUGCCUc--GCGCa -3'
miRNA:   3'- cucGCGGCUCUCG--AUGGAcuuUGCGg -5'
24404 5' -55.1 NC_005264.1 + 35011 0.67 0.914374
Target:  5'- cGGCGCuCGAagagGAGCgcuggccguCCUGGccGACGCCc -3'
miRNA:   3'- cUCGCG-GCU----CUCGau-------GGACU--UUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 101404 0.67 0.914374
Target:  5'- cGGCGCCGAgGAGCggGCCgccGAAA-GCa -3'
miRNA:   3'- cUCGCGGCU-CUCGa-UGGa--CUUUgCGg -5'
24404 5' -55.1 NC_005264.1 + 5052 0.67 0.914374
Target:  5'- uGGGCGCCGc---CUAgCUGGgaaGACGCCg -3'
miRNA:   3'- -CUCGCGGCucucGAUgGACU---UUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 88923 0.67 0.914374
Target:  5'- -cGCGUgGAGgacaagaacAGgUGCCUGgcACGCCu -3'
miRNA:   3'- cuCGCGgCUC---------UCgAUGGACuuUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 131169 0.67 0.914374
Target:  5'- --cCGCCGAGAGCccUGCCUc--GCGCa -3'
miRNA:   3'- cucGCGGCUCUCG--AUGGAcuuUGCGg -5'
24404 5' -55.1 NC_005264.1 + 154038 0.67 0.914374
Target:  5'- cGGCGCuCGAagagGAGCgcuggccguCCUGGccGACGCCc -3'
miRNA:   3'- cUCGCG-GCU----CUCGau-------GGACU--UUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 136451 0.67 0.914374
Target:  5'- uGGGCGCUGAG-GCcGCgCUcaGAGacgGCGCCg -3'
miRNA:   3'- -CUCGCGGCUCuCGaUG-GA--CUU---UGCGG- -5'
24404 5' -55.1 NC_005264.1 + 96282 0.67 0.914374
Target:  5'- uGGCGgCG-GAGCUugUgGAAAuCGCCg -3'
miRNA:   3'- cUCGCgGCuCUCGAugGaCUUU-GCGG- -5'
24404 5' -55.1 NC_005264.1 + 83115 0.67 0.908375
Target:  5'- --aCGCCGAcGGGCgccaagGCCgcgGAGGCGCg -3'
miRNA:   3'- cucGCGGCU-CUCGa-----UGGa--CUUUGCGg -5'
24404 5' -55.1 NC_005264.1 + 17762 0.67 0.908375
Target:  5'- -cGCGgCaagGAGAGCUGCCcGGcccggcuucuagAGCGCCa -3'
miRNA:   3'- cuCGCgG---CUCUCGAUGGaCU------------UUGCGG- -5'
24404 5' -55.1 NC_005264.1 + 154383 0.67 0.908375
Target:  5'- cGAGCGaCGAacucGAGCUgaaACCaGuuGCGCCg -3'
miRNA:   3'- -CUCGCgGCU----CUCGA---UGGaCuuUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.