miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24405 3' -50.7 NC_005264.1 + 131240 0.66 0.993814
Target:  5'- -aUGCGCGCcGCcucGCCAgAGAGCa -3'
miRNA:   3'- uaAUGCGCGaCGacaCGGUgUUUUGc -5'
24405 3' -50.7 NC_005264.1 + 12213 0.66 0.993814
Target:  5'- -aUGCGCGCcGCcucGCCAgAGAGCa -3'
miRNA:   3'- uaAUGCGCGaCGacaCGGUgUUUUGc -5'
24405 3' -50.7 NC_005264.1 + 61505 0.66 0.993814
Target:  5'- --cACGUGUUGCUcggGCCGCAccuGGGCa -3'
miRNA:   3'- uaaUGCGCGACGAca-CGGUGU---UUUGc -5'
24405 3' -50.7 NC_005264.1 + 142386 0.66 0.992839
Target:  5'- -aUGCGCGCcGCUGU-CCGCcggcuACGc -3'
miRNA:   3'- uaAUGCGCGaCGACAcGGUGuuu--UGC- -5'
24405 3' -50.7 NC_005264.1 + 59978 0.66 0.992839
Target:  5'- gAUUACGUGuCUGCaGcGCCGCAGcaGGCu -3'
miRNA:   3'- -UAAUGCGC-GACGaCaCGGUGUU--UUGc -5'
24405 3' -50.7 NC_005264.1 + 5247 0.66 0.990522
Target:  5'- --gACGCcCUGCUGgGCUACGgggAAGCGc -3'
miRNA:   3'- uaaUGCGcGACGACaCGGUGU---UUUGC- -5'
24405 3' -50.7 NC_005264.1 + 156171 0.66 0.990522
Target:  5'- -aUAUGCGCgGCUuUGCgGCGugGCGg -3'
miRNA:   3'- uaAUGCGCGaCGAcACGgUGUuuUGC- -5'
24405 3' -50.7 NC_005264.1 + 129584 0.66 0.990522
Target:  5'- cUUGCGCGCUcugcaggcGCUGcggcgcgGCgGCGAAGCu -3'
miRNA:   3'- uAAUGCGCGA--------CGACa------CGgUGUUUUGc -5'
24405 3' -50.7 NC_005264.1 + 95327 0.66 0.990522
Target:  5'- gAUUGC-CGCcGCcGggcGCCGCGAAACGg -3'
miRNA:   3'- -UAAUGcGCGaCGaCa--CGGUGUUUUGC- -5'
24405 3' -50.7 NC_005264.1 + 54307 0.66 0.989161
Target:  5'- --gACGUGCgacGCagUGUGCCACGGugguGGCGc -3'
miRNA:   3'- uaaUGCGCGa--CG--ACACGGUGUU----UUGC- -5'
24405 3' -50.7 NC_005264.1 + 59966 0.66 0.989161
Target:  5'- ---cCGCGCcGCUcaGCCACGcgGCGg -3'
miRNA:   3'- uaauGCGCGaCGAcaCGGUGUuuUGC- -5'
24405 3' -50.7 NC_005264.1 + 145812 0.66 0.989161
Target:  5'- ---cCGCGCUGCUG-GCgACGAucGCc -3'
miRNA:   3'- uaauGCGCGACGACaCGgUGUUu-UGc -5'
24405 3' -50.7 NC_005264.1 + 22722 0.66 0.988725
Target:  5'- --gGCGCGCaagcgugugucugcUGCccgGUGCUggGCGAAGCGa -3'
miRNA:   3'- uaaUGCGCG--------------ACGa--CACGG--UGUUUUGC- -5'
24405 3' -50.7 NC_005264.1 + 103669 0.67 0.987653
Target:  5'- --aGCGCGUUGCUagaccaCCAUAGAGCGc -3'
miRNA:   3'- uaaUGCGCGACGAcac---GGUGUUUUGC- -5'
24405 3' -50.7 NC_005264.1 + 28361 0.67 0.984156
Target:  5'- --cACGCGCaauUGgaGUGCgGCAGAAUu -3'
miRNA:   3'- uaaUGCGCG---ACgaCACGgUGUUUUGc -5'
24405 3' -50.7 NC_005264.1 + 8161 0.67 0.984156
Target:  5'- -cUGCGcCGCUGCUcGUGUCAUcuagggaauAGAGCa -3'
miRNA:   3'- uaAUGC-GCGACGA-CACGGUG---------UUUUGc -5'
24405 3' -50.7 NC_005264.1 + 142620 0.67 0.984156
Target:  5'- --cACGCGCggggccacaUGC-GUGCCACGAuACc -3'
miRNA:   3'- uaaUGCGCG---------ACGaCACGGUGUUuUGc -5'
24405 3' -50.7 NC_005264.1 + 139851 0.67 0.982148
Target:  5'- --aACGCGCgucccaUGUGgCACGGGGCGa -3'
miRNA:   3'- uaaUGCGCGacg---ACACgGUGUUUUGC- -5'
24405 3' -50.7 NC_005264.1 + 150851 0.67 0.979954
Target:  5'- --gACGCGUacucUGCcGUGCCGCGc-GCGg -3'
miRNA:   3'- uaaUGCGCG----ACGaCACGGUGUuuUGC- -5'
24405 3' -50.7 NC_005264.1 + 31825 0.67 0.979954
Target:  5'- --gACGCGUacucUGCcGUGCCGCGc-GCGg -3'
miRNA:   3'- uaaUGCGCG----ACGaCACGGUGUuuUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.