miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24405 3' -50.7 NC_005264.1 + 52075 0.68 0.974704
Target:  5'- --gGCGCgaaagaaGCUGCUGUugcGCUugAGGGCGa -3'
miRNA:   3'- uaaUGCG-------CGACGACA---CGGugUUUUGC- -5'
24405 3' -50.7 NC_005264.1 + 70728 0.68 0.972171
Target:  5'- --cGCuGCGCUG-UGUGCCGCcgcAGCGa -3'
miRNA:   3'- uaaUG-CGCGACgACACGGUGuu-UUGC- -5'
24405 3' -50.7 NC_005264.1 + 34275 0.68 0.972171
Target:  5'- --cGCGUGCUGCgcuccGCCGCGGAAa- -3'
miRNA:   3'- uaaUGCGCGACGaca--CGGUGUUUUgc -5'
24405 3' -50.7 NC_005264.1 + 17396 0.68 0.969148
Target:  5'- uUUAUGgGCUGCgaagagGUGCgGCGuGACGu -3'
miRNA:   3'- uAAUGCgCGACGa-----CACGgUGUuUUGC- -5'
24405 3' -50.7 NC_005264.1 + 7037 0.68 0.969148
Target:  5'- -cUGCGUGCUGC---GCCACGAAuuCGg -3'
miRNA:   3'- uaAUGCGCGACGacaCGGUGUUUu-GC- -5'
24405 3' -50.7 NC_005264.1 + 84260 0.69 0.946028
Target:  5'- --cACGCGCUGCguUGCUGCGAcACa -3'
miRNA:   3'- uaaUGCGCGACGacACGGUGUUuUGc -5'
24405 3' -50.7 NC_005264.1 + 162693 0.7 0.941296
Target:  5'- --gGCGCGCUGCgc-GCCGgcguUAAGGCGg -3'
miRNA:   3'- uaaUGCGCGACGacaCGGU----GUUUUGC- -5'
24405 3' -50.7 NC_005264.1 + 43667 0.7 0.941296
Target:  5'- --gGCGCGCUGCgc-GCCGgcguUAAGGCGg -3'
miRNA:   3'- uaaUGCGCGACGacaCGGU----GUUUUGC- -5'
24405 3' -50.7 NC_005264.1 + 77268 0.7 0.925528
Target:  5'- --cACGUGgUGCacgGUGCCGCGcucGAACGa -3'
miRNA:   3'- uaaUGCGCgACGa--CACGGUGU---UUUGC- -5'
24405 3' -50.7 NC_005264.1 + 54921 0.71 0.907393
Target:  5'- --cGCgGCGCUGCUGgcgaacgGCUGCGAGugGc -3'
miRNA:   3'- uaaUG-CGCGACGACa------CGGUGUUUugC- -5'
24405 3' -50.7 NC_005264.1 + 98546 0.72 0.864237
Target:  5'- --aACGCGCUGUgg-GCCGCGAuACu -3'
miRNA:   3'- uaaUGCGCGACGacaCGGUGUUuUGc -5'
24405 3' -50.7 NC_005264.1 + 25900 0.73 0.821013
Target:  5'- --gGgGCGCUGCgccuucuUGUccGCCACGAAGCGg -3'
miRNA:   3'- uaaUgCGCGACG-------ACA--CGGUGUUUUGC- -5'
24405 3' -50.7 NC_005264.1 + 156332 0.74 0.784584
Target:  5'- --aACGCGCUGCUucgcuaccaaGUGCgGCAGcAACGa -3'
miRNA:   3'- uaaUGCGCGACGA----------CACGgUGUU-UUGC- -5'
24405 3' -50.7 NC_005264.1 + 93048 0.75 0.724277
Target:  5'- -aUGCGUGCUGCUGcgcUGCCAU---GCGg -3'
miRNA:   3'- uaAUGCGCGACGAC---ACGGUGuuuUGC- -5'
24405 3' -50.7 NC_005264.1 + 78563 0.77 0.585739
Target:  5'- uUUGCGCGUcgcuuuUGCUGUGUCGCAGcAACGc -3'
miRNA:   3'- uAAUGCGCG------ACGACACGGUGUU-UUGC- -5'
24405 3' -50.7 NC_005264.1 + 109245 1.07 0.011279
Target:  5'- gAUUACGCGCUGCUGUGCCACAAAACGc -3'
miRNA:   3'- -UAAUGCGCGACGACACGGUGUUUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.