Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24405 | 3' | -50.7 | NC_005264.1 | + | 162693 | 0.7 | 0.941296 |
Target: 5'- --gGCGCGCUGCgc-GCCGgcguUAAGGCGg -3' miRNA: 3'- uaaUGCGCGACGacaCGGU----GUUUUGC- -5' |
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24405 | 3' | -50.7 | NC_005264.1 | + | 156332 | 0.74 | 0.784584 |
Target: 5'- --aACGCGCUGCUucgcuaccaaGUGCgGCAGcAACGa -3' miRNA: 3'- uaaUGCGCGACGA----------CACGgUGUU-UUGC- -5' |
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24405 | 3' | -50.7 | NC_005264.1 | + | 156171 | 0.66 | 0.990522 |
Target: 5'- -aUAUGCGCgGCUuUGCgGCGugGCGg -3' miRNA: 3'- uaAUGCGCGaCGAcACGgUGUuuUGC- -5' |
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24405 | 3' | -50.7 | NC_005264.1 | + | 150851 | 0.67 | 0.979954 |
Target: 5'- --gACGCGUacucUGCcGUGCCGCGc-GCGg -3' miRNA: 3'- uaaUGCGCG----ACGaCACGGUGUuuUGC- -5' |
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24405 | 3' | -50.7 | NC_005264.1 | + | 145812 | 0.66 | 0.989161 |
Target: 5'- ---cCGCGCUGCUG-GCgACGAucGCc -3' miRNA: 3'- uaauGCGCGACGACaCGgUGUUu-UGc -5' |
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24405 | 3' | -50.7 | NC_005264.1 | + | 142620 | 0.67 | 0.984156 |
Target: 5'- --cACGCGCggggccacaUGC-GUGCCACGAuACc -3' miRNA: 3'- uaaUGCGCG---------ACGaCACGGUGUUuUGc -5' |
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24405 | 3' | -50.7 | NC_005264.1 | + | 142386 | 0.66 | 0.992839 |
Target: 5'- -aUGCGCGCcGCUGU-CCGCcggcuACGc -3' miRNA: 3'- uaAUGCGCGaCGACAcGGUGuuu--UGC- -5' |
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24405 | 3' | -50.7 | NC_005264.1 | + | 139851 | 0.67 | 0.982148 |
Target: 5'- --aACGCGCgucccaUGUGgCACGGGGCGa -3' miRNA: 3'- uaaUGCGCGacg---ACACgGUGUUUUGC- -5' |
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24405 | 3' | -50.7 | NC_005264.1 | + | 131240 | 0.66 | 0.993814 |
Target: 5'- -aUGCGCGCcGCcucGCCAgAGAGCa -3' miRNA: 3'- uaAUGCGCGaCGacaCGGUgUUUUGc -5' |
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24405 | 3' | -50.7 | NC_005264.1 | + | 129584 | 0.66 | 0.990522 |
Target: 5'- cUUGCGCGCUcugcaggcGCUGcggcgcgGCgGCGAAGCu -3' miRNA: 3'- uAAUGCGCGA--------CGACa------CGgUGUUUUGc -5' |
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24405 | 3' | -50.7 | NC_005264.1 | + | 109245 | 1.07 | 0.011279 |
Target: 5'- gAUUACGCGCUGCUGUGCCACAAAACGc -3' miRNA: 3'- -UAAUGCGCGACGACACGGUGUUUUGC- -5' |
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24405 | 3' | -50.7 | NC_005264.1 | + | 103669 | 0.67 | 0.987653 |
Target: 5'- --aGCGCGUUGCUagaccaCCAUAGAGCGc -3' miRNA: 3'- uaaUGCGCGACGAcac---GGUGUUUUGC- -5' |
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24405 | 3' | -50.7 | NC_005264.1 | + | 98546 | 0.72 | 0.864237 |
Target: 5'- --aACGCGCUGUgg-GCCGCGAuACu -3' miRNA: 3'- uaaUGCGCGACGacaCGGUGUUuUGc -5' |
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24405 | 3' | -50.7 | NC_005264.1 | + | 95327 | 0.66 | 0.990522 |
Target: 5'- gAUUGC-CGCcGCcGggcGCCGCGAAACGg -3' miRNA: 3'- -UAAUGcGCGaCGaCa--CGGUGUUUUGC- -5' |
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24405 | 3' | -50.7 | NC_005264.1 | + | 93048 | 0.75 | 0.724277 |
Target: 5'- -aUGCGUGCUGCUGcgcUGCCAU---GCGg -3' miRNA: 3'- uaAUGCGCGACGAC---ACGGUGuuuUGC- -5' |
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24405 | 3' | -50.7 | NC_005264.1 | + | 84260 | 0.69 | 0.946028 |
Target: 5'- --cACGCGCUGCguUGCUGCGAcACa -3' miRNA: 3'- uaaUGCGCGACGacACGGUGUUuUGc -5' |
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24405 | 3' | -50.7 | NC_005264.1 | + | 78563 | 0.77 | 0.585739 |
Target: 5'- uUUGCGCGUcgcuuuUGCUGUGUCGCAGcAACGc -3' miRNA: 3'- uAAUGCGCG------ACGACACGGUGUU-UUGC- -5' |
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24405 | 3' | -50.7 | NC_005264.1 | + | 77268 | 0.7 | 0.925528 |
Target: 5'- --cACGUGgUGCacgGUGCCGCGcucGAACGa -3' miRNA: 3'- uaaUGCGCgACGa--CACGGUGU---UUUGC- -5' |
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24405 | 3' | -50.7 | NC_005264.1 | + | 70728 | 0.68 | 0.972171 |
Target: 5'- --cGCuGCGCUG-UGUGCCGCcgcAGCGa -3' miRNA: 3'- uaaUG-CGCGACgACACGGUGuu-UUGC- -5' |
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24405 | 3' | -50.7 | NC_005264.1 | + | 61505 | 0.66 | 0.993814 |
Target: 5'- --cACGUGUUGCUcggGCCGCAccuGGGCa -3' miRNA: 3'- uaaUGCGCGACGAca-CGGUGU---UUUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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