miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24405 5' -53 NC_005264.1 + 34092 0.66 0.985112
Target:  5'- uGCCGCg--GCGgGcACAAUGGCUcagCGg -3'
miRNA:   3'- -CGGCGagaCGCgC-UGUUGCUGAaa-GC- -5'
24405 5' -53 NC_005264.1 + 23740 0.66 0.985112
Target:  5'- cGCCGCUCaGCaGCaGCcGCGACg-UCGu -3'
miRNA:   3'- -CGGCGAGaCG-CGcUGuUGCUGaaAGC- -5'
24405 5' -53 NC_005264.1 + 153119 0.66 0.985112
Target:  5'- uGCCGCg--GCGgGcACAAUGGCUcagCGg -3'
miRNA:   3'- -CGGCGagaCGCgC-UGUUGCUGAaa-GC- -5'
24405 5' -53 NC_005264.1 + 154470 0.66 0.983275
Target:  5'- cGCCGCgUCcgGCGCcgguaagcauCAGCGACggUCGc -3'
miRNA:   3'- -CGGCG-AGa-CGCGcu--------GUUGCUGaaAGC- -5'
24405 5' -53 NC_005264.1 + 72991 0.66 0.983275
Target:  5'- uGCCGCaUUUGCGaacuaGGCAugaacccguuucGCGGCUUUUc -3'
miRNA:   3'- -CGGCG-AGACGCg----CUGU------------UGCUGAAAGc -5'
24405 5' -53 NC_005264.1 + 35443 0.66 0.983275
Target:  5'- cGCCGCgUCcgGCGCcgguaagcauCAGCGACggUCGc -3'
miRNA:   3'- -CGGCG-AGa-CGCGcu--------GUUGCUGaaAGC- -5'
24405 5' -53 NC_005264.1 + 156176 0.66 0.983275
Target:  5'- cGCgGCUUUGCggcgugGCGGCGcCGGCUauaugUCGg -3'
miRNA:   3'- -CGgCGAGACG------CGCUGUuGCUGAa----AGC- -5'
24405 5' -53 NC_005264.1 + 145810 0.66 0.983275
Target:  5'- gGCCGCgCUGC-UGGCGACGA---UCGc -3'
miRNA:   3'- -CGGCGaGACGcGCUGUUGCUgaaAGC- -5'
24405 5' -53 NC_005264.1 + 95343 0.66 0.983275
Target:  5'- cGCCGCgaaacggacUCgGCGgGGCGGCGGCccggccUCGg -3'
miRNA:   3'- -CGGCG---------AGaCGCgCUGUUGCUGaa----AGC- -5'
24405 5' -53 NC_005264.1 + 16171 0.66 0.981272
Target:  5'- uGCCGCcCUGCGCGGaggucggucGCGGCa---- -3'
miRNA:   3'- -CGGCGaGACGCGCUgu-------UGCUGaaagc -5'
24405 5' -53 NC_005264.1 + 46890 0.66 0.981272
Target:  5'- cGCCGCguaccuccuagCUGCGCcGCGuguucGCGGCUcUCa -3'
miRNA:   3'- -CGGCGa----------GACGCGcUGU-----UGCUGAaAGc -5'
24405 5' -53 NC_005264.1 + 105419 0.66 0.981272
Target:  5'- uCCGUUUcGCGCGccaGugGACUUUUGa -3'
miRNA:   3'- cGGCGAGaCGCGCug-UugCUGAAAGC- -5'
24405 5' -53 NC_005264.1 + 122102 0.66 0.981272
Target:  5'- cGCCGCgaCUG-GCGGCGGCcgagGACccgUUCGg -3'
miRNA:   3'- -CGGCGa-GACgCGCUGUUG----CUGa--AAGC- -5'
24405 5' -53 NC_005264.1 + 7881 0.66 0.981272
Target:  5'- cGCUGCgcaUCUGCGCG-CGuACGACg---- -3'
miRNA:   3'- -CGGCG---AGACGCGCuGU-UGCUGaaagc -5'
24405 5' -53 NC_005264.1 + 3075 0.66 0.981272
Target:  5'- cGCCGCgaCUG-GCGGCGGCcgagGACccgUUCGg -3'
miRNA:   3'- -CGGCGa-GACgCGCUGUUG----CUGa--AAGC- -5'
24405 5' -53 NC_005264.1 + 153512 0.66 0.981063
Target:  5'- gGCCGCccCUG-GCGGgGACGAacggaacCUUUCGu -3'
miRNA:   3'- -CGGCGa-GACgCGCUgUUGCU-------GAAAGC- -5'
24405 5' -53 NC_005264.1 + 157644 0.66 0.979095
Target:  5'- cGCCGCg--GCGCGAgAcACGACa---- -3'
miRNA:   3'- -CGGCGagaCGCGCUgU-UGCUGaaagc -5'
24405 5' -53 NC_005264.1 + 38617 0.66 0.979095
Target:  5'- cGCCGCg--GCGCGAgAcACGACa---- -3'
miRNA:   3'- -CGGCGagaCGCGCUgU-UGCUGaaagc -5'
24405 5' -53 NC_005264.1 + 66501 0.66 0.979095
Target:  5'- gGCUGCgcgGCGCGcuCGACGagcucGCUUUCGc -3'
miRNA:   3'- -CGGCGagaCGCGCu-GUUGC-----UGAAAGC- -5'
24405 5' -53 NC_005264.1 + 58852 0.66 0.976736
Target:  5'- gGCCGCUCUcccugcucaagGCggagguuucuagGCGAUGACcACUUUCGc -3'
miRNA:   3'- -CGGCGAGA-----------CG------------CGCUGUUGcUGAAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.