Results 1 - 20 of 93 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24405 | 5' | -53 | NC_005264.1 | + | 109279 | 1.11 | 0.004744 |
Target: 5'- cGCCGCUCUGCGCGACAACGACUUUCGu -3' miRNA: 3'- -CGGCGAGACGCGCUGUUGCUGAAAGC- -5' |
|||||||
24405 | 5' | -53 | NC_005264.1 | + | 46430 | 0.76 | 0.612976 |
Target: 5'- cGCCGCcCUGCGCucGACGucggccuGCGGCUUUUGc -3' miRNA: 3'- -CGGCGaGACGCG--CUGU-------UGCUGAAAGC- -5' |
|||||||
24405 | 5' | -53 | NC_005264.1 | + | 122818 | 0.74 | 0.675782 |
Target: 5'- cGCCGCcgaUCUGCGUGGCGguccGCGAg-UUCGg -3' miRNA: 3'- -CGGCG---AGACGCGCUGU----UGCUgaAAGC- -5' |
|||||||
24405 | 5' | -53 | NC_005264.1 | + | 3792 | 0.74 | 0.675782 |
Target: 5'- cGCCGCcgaUCUGCGUGGCGguccGCGAg-UUCGg -3' miRNA: 3'- -CGGCG---AGACGCGCUGU----UGCUgaAAGC- -5' |
|||||||
24405 | 5' | -53 | NC_005264.1 | + | 44568 | 0.73 | 0.726335 |
Target: 5'- cGCCGUgCUGgGUGACGACGAggugUUCGa -3' miRNA: 3'- -CGGCGaGACgCGCUGUUGCUga--AAGC- -5' |
|||||||
24405 | 5' | -53 | NC_005264.1 | + | 129601 | 0.72 | 0.78417 |
Target: 5'- cGCUGCg--GCGCGGCGGCGaaGCUUcUCGa -3' miRNA: 3'- -CGGCGagaCGCGCUGUUGC--UGAA-AGC- -5' |
|||||||
24405 | 5' | -53 | NC_005264.1 | + | 157309 | 0.72 | 0.793378 |
Target: 5'- cCCGCUCcGCGCGAgAcgccGCGGCUgUCa -3' miRNA: 3'- cGGCGAGaCGCGCUgU----UGCUGAaAGc -5' |
|||||||
24405 | 5' | -53 | NC_005264.1 | + | 8708 | 0.71 | 0.828645 |
Target: 5'- cUCGCUCUGCGCGcGCGugGccGCcgUUUCGg -3' miRNA: 3'- cGGCGAGACGCGC-UGUugC--UG--AAAGC- -5' |
|||||||
24405 | 5' | -53 | NC_005264.1 | + | 2651 | 0.71 | 0.828645 |
Target: 5'- -gCGCUCUGCaGCGGCAGCucuGACguccuagUCGg -3' miRNA: 3'- cgGCGAGACG-CGCUGUUG---CUGaa-----AGC- -5' |
|||||||
24405 | 5' | -53 | NC_005264.1 | + | 151178 | 0.71 | 0.837028 |
Target: 5'- gGUCGaaUUGCGCGACGACGACa---- -3' miRNA: 3'- -CGGCgaGACGCGCUGUUGCUGaaagc -5' |
|||||||
24405 | 5' | -53 | NC_005264.1 | + | 68400 | 0.7 | 0.868598 |
Target: 5'- cUCGCUCUGCGgGAgGACgGGCUgcUCGc -3' miRNA: 3'- cGGCGAGACGCgCUgUUG-CUGAa-AGC- -5' |
|||||||
24405 | 5' | -53 | NC_005264.1 | + | 26364 | 0.7 | 0.868598 |
Target: 5'- cGCCGCggcaggCUGCGCGGCGccgucucugagcGCGGCc-UCa -3' miRNA: 3'- -CGGCGa-----GACGCGCUGU------------UGCUGaaAGc -5' |
|||||||
24405 | 5' | -53 | NC_005264.1 | + | 102218 | 0.7 | 0.875967 |
Target: 5'- uGCUGCUcCUGCGCGAgc-CGGCUgccgCGg -3' miRNA: 3'- -CGGCGA-GACGCGCUguuGCUGAaa--GC- -5' |
|||||||
24405 | 5' | -53 | NC_005264.1 | + | 42729 | 0.7 | 0.875967 |
Target: 5'- cGCUGCgccccacuUCUGCGCGGCAcccggugggcACGACUccCGc -3' miRNA: 3'- -CGGCG--------AGACGCGCUGU----------UGCUGAaaGC- -5' |
|||||||
24405 | 5' | -53 | NC_005264.1 | + | 48488 | 0.7 | 0.896726 |
Target: 5'- cCCGCgcgUUGCGCGGCAA-GGCUgaCGa -3' miRNA: 3'- cGGCGa--GACGCGCUGUUgCUGAaaGC- -5' |
|||||||
24405 | 5' | -53 | NC_005264.1 | + | 34786 | 0.7 | 0.896726 |
Target: 5'- aGCCGCUCaUGCggGCGGCcauCGACg--CGg -3' miRNA: 3'- -CGGCGAG-ACG--CGCUGuu-GCUGaaaGC- -5' |
|||||||
24405 | 5' | -53 | NC_005264.1 | + | 30380 | 0.7 | 0.896726 |
Target: 5'- cGCCGCgUC-GCGUcucGGCGGCGGCggUCGc -3' miRNA: 3'- -CGGCG-AGaCGCG---CUGUUGCUGaaAGC- -5' |
|||||||
24405 | 5' | -53 | NC_005264.1 | + | 149407 | 0.7 | 0.896726 |
Target: 5'- cGCCGCgUC-GCGUcucGGCGGCGGCggUCGc -3' miRNA: 3'- -CGGCG-AGaCGCG---CUGUUGCUGaaAGC- -5' |
|||||||
24405 | 5' | -53 | NC_005264.1 | + | 117304 | 0.7 | 0.896726 |
Target: 5'- uGCCGCUCUcCGCGu--GCGACUgagaagCGu -3' miRNA: 3'- -CGGCGAGAcGCGCuguUGCUGAaa----GC- -5' |
|||||||
24405 | 5' | -53 | NC_005264.1 | + | 82594 | 0.7 | 0.903183 |
Target: 5'- cGCC-CUCaagGCGUGACAaucGCGACU-UCGu -3' miRNA: 3'- -CGGcGAGa--CGCGCUGU---UGCUGAaAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home