miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24405 5' -53 NC_005264.1 + 109279 1.11 0.004744
Target:  5'- cGCCGCUCUGCGCGACAACGACUUUCGu -3'
miRNA:   3'- -CGGCGAGACGCGCUGUUGCUGAAAGC- -5'
24405 5' -53 NC_005264.1 + 46430 0.76 0.612976
Target:  5'- cGCCGCcCUGCGCucGACGucggccuGCGGCUUUUGc -3'
miRNA:   3'- -CGGCGaGACGCG--CUGU-------UGCUGAAAGC- -5'
24405 5' -53 NC_005264.1 + 122818 0.74 0.675782
Target:  5'- cGCCGCcgaUCUGCGUGGCGguccGCGAg-UUCGg -3'
miRNA:   3'- -CGGCG---AGACGCGCUGU----UGCUgaAAGC- -5'
24405 5' -53 NC_005264.1 + 3792 0.74 0.675782
Target:  5'- cGCCGCcgaUCUGCGUGGCGguccGCGAg-UUCGg -3'
miRNA:   3'- -CGGCG---AGACGCGCUGU----UGCUgaAAGC- -5'
24405 5' -53 NC_005264.1 + 44568 0.73 0.726335
Target:  5'- cGCCGUgCUGgGUGACGACGAggugUUCGa -3'
miRNA:   3'- -CGGCGaGACgCGCUGUUGCUga--AAGC- -5'
24405 5' -53 NC_005264.1 + 129601 0.72 0.78417
Target:  5'- cGCUGCg--GCGCGGCGGCGaaGCUUcUCGa -3'
miRNA:   3'- -CGGCGagaCGCGCUGUUGC--UGAA-AGC- -5'
24405 5' -53 NC_005264.1 + 157309 0.72 0.793378
Target:  5'- cCCGCUCcGCGCGAgAcgccGCGGCUgUCa -3'
miRNA:   3'- cGGCGAGaCGCGCUgU----UGCUGAaAGc -5'
24405 5' -53 NC_005264.1 + 8708 0.71 0.828645
Target:  5'- cUCGCUCUGCGCGcGCGugGccGCcgUUUCGg -3'
miRNA:   3'- cGGCGAGACGCGC-UGUugC--UG--AAAGC- -5'
24405 5' -53 NC_005264.1 + 2651 0.71 0.828645
Target:  5'- -gCGCUCUGCaGCGGCAGCucuGACguccuagUCGg -3'
miRNA:   3'- cgGCGAGACG-CGCUGUUG---CUGaa-----AGC- -5'
24405 5' -53 NC_005264.1 + 151178 0.71 0.837028
Target:  5'- gGUCGaaUUGCGCGACGACGACa---- -3'
miRNA:   3'- -CGGCgaGACGCGCUGUUGCUGaaagc -5'
24405 5' -53 NC_005264.1 + 68400 0.7 0.868598
Target:  5'- cUCGCUCUGCGgGAgGACgGGCUgcUCGc -3'
miRNA:   3'- cGGCGAGACGCgCUgUUG-CUGAa-AGC- -5'
24405 5' -53 NC_005264.1 + 26364 0.7 0.868598
Target:  5'- cGCCGCggcaggCUGCGCGGCGccgucucugagcGCGGCc-UCa -3'
miRNA:   3'- -CGGCGa-----GACGCGCUGU------------UGCUGaaAGc -5'
24405 5' -53 NC_005264.1 + 102218 0.7 0.875967
Target:  5'- uGCUGCUcCUGCGCGAgc-CGGCUgccgCGg -3'
miRNA:   3'- -CGGCGA-GACGCGCUguuGCUGAaa--GC- -5'
24405 5' -53 NC_005264.1 + 42729 0.7 0.875967
Target:  5'- cGCUGCgccccacuUCUGCGCGGCAcccggugggcACGACUccCGc -3'
miRNA:   3'- -CGGCG--------AGACGCGCUGU----------UGCUGAaaGC- -5'
24405 5' -53 NC_005264.1 + 48488 0.7 0.896726
Target:  5'- cCCGCgcgUUGCGCGGCAA-GGCUgaCGa -3'
miRNA:   3'- cGGCGa--GACGCGCUGUUgCUGAaaGC- -5'
24405 5' -53 NC_005264.1 + 34786 0.7 0.896726
Target:  5'- aGCCGCUCaUGCggGCGGCcauCGACg--CGg -3'
miRNA:   3'- -CGGCGAG-ACG--CGCUGuu-GCUGaaaGC- -5'
24405 5' -53 NC_005264.1 + 30380 0.7 0.896726
Target:  5'- cGCCGCgUC-GCGUcucGGCGGCGGCggUCGc -3'
miRNA:   3'- -CGGCG-AGaCGCG---CUGUUGCUGaaAGC- -5'
24405 5' -53 NC_005264.1 + 149407 0.7 0.896726
Target:  5'- cGCCGCgUC-GCGUcucGGCGGCGGCggUCGc -3'
miRNA:   3'- -CGGCG-AGaCGCG---CUGUUGCUGaaAGC- -5'
24405 5' -53 NC_005264.1 + 117304 0.7 0.896726
Target:  5'- uGCCGCUCUcCGCGu--GCGACUgagaagCGu -3'
miRNA:   3'- -CGGCGAGAcGCGCuguUGCUGAaa----GC- -5'
24405 5' -53 NC_005264.1 + 82594 0.7 0.903183
Target:  5'- cGCC-CUCaagGCGUGACAaucGCGACU-UCGu -3'
miRNA:   3'- -CGGcGAGa--CGCGCUGU---UGCUGAaAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.