miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24405 5' -53 NC_005264.1 + 82594 0.7 0.903183
Target:  5'- cGCC-CUCaagGCGUGACAaucGCGACU-UCGu -3'
miRNA:   3'- -CGGcGAGa--CGCGCUGU---UGCUGAaAGC- -5'
24405 5' -53 NC_005264.1 + 151852 0.69 0.909402
Target:  5'- cGCCGCUCcgGCgGCGACAcgugggggGCGuCUUcgCGg -3'
miRNA:   3'- -CGGCGAGa-CG-CGCUGU--------UGCuGAAa-GC- -5'
24405 5' -53 NC_005264.1 + 96319 0.69 0.909402
Target:  5'- uGCUGUaCUGCGCGAaAGCGAgCUcgUCGa -3'
miRNA:   3'- -CGGCGaGACGCGCUgUUGCU-GAa-AGC- -5'
24405 5' -53 NC_005264.1 + 83250 0.69 0.909402
Target:  5'- cGCCGCUgaUGCGCuGGCGcgGCGAacuucaaUUUCGg -3'
miRNA:   3'- -CGGCGAg-ACGCG-CUGU--UGCUg------AAAGC- -5'
24405 5' -53 NC_005264.1 + 69611 0.69 0.909402
Target:  5'- cGCCGCcCgGCGUGAgAACGACa---- -3'
miRNA:   3'- -CGGCGaGaCGCGCUgUUGCUGaaagc -5'
24405 5' -53 NC_005264.1 + 74879 0.69 0.915382
Target:  5'- aCCGCggUGCGUGGCuuCGACgaUCGu -3'
miRNA:   3'- cGGCGagACGCGCUGuuGCUGaaAGC- -5'
24405 5' -53 NC_005264.1 + 59969 0.69 0.92112
Target:  5'- cGCCGCUCaGCcacGCGGCggUGGCcg-CGa -3'
miRNA:   3'- -CGGCGAGaCG---CGCUGuuGCUGaaaGC- -5'
24405 5' -53 NC_005264.1 + 84647 0.69 0.92112
Target:  5'- uGCCGCUCcGCGCauc--CGGCUUUCc -3'
miRNA:   3'- -CGGCGAGaCGCGcuguuGCUGAAAGc -5'
24405 5' -53 NC_005264.1 + 103136 0.69 0.92112
Target:  5'- aGCCGC-CgGCGCGGCGcGCGGCgcaaagCGu -3'
miRNA:   3'- -CGGCGaGaCGCGCUGU-UGCUGaaa---GC- -5'
24405 5' -53 NC_005264.1 + 5279 0.69 0.926616
Target:  5'- gGCCGgaCgGCGgGGCGGCGGCUg--- -3'
miRNA:   3'- -CGGCgaGaCGCgCUGUUGCUGAaagc -5'
24405 5' -53 NC_005264.1 + 124306 0.69 0.926616
Target:  5'- gGCCGgaCgGCGgGGCGGCGGCUg--- -3'
miRNA:   3'- -CGGCgaGaCGCgCUGUUGCUGAaagc -5'
24405 5' -53 NC_005264.1 + 139107 0.69 0.931869
Target:  5'- gGCUGCUgCUGaGCGGCGGCGugUgcccUUUGg -3'
miRNA:   3'- -CGGCGA-GACgCGCUGUUGCugA----AAGC- -5'
24405 5' -53 NC_005264.1 + 95973 0.68 0.935402
Target:  5'- gGCUGCUCUccgcGCGCGAUcuauuuucgcgucgGGCGACgg-CGu -3'
miRNA:   3'- -CGGCGAGA----CGCGCUG--------------UUGCUGaaaGC- -5'
24405 5' -53 NC_005264.1 + 126297 0.68 0.93688
Target:  5'- uGCCGCUUUcgggcGCGCGGcCGAUGGCUccugCGc -3'
miRNA:   3'- -CGGCGAGA-----CGCGCU-GUUGCUGAaa--GC- -5'
24405 5' -53 NC_005264.1 + 79866 0.68 0.93688
Target:  5'- aCCGUaccuUCgucacggggGCGCGGCGGCGACcgUCGc -3'
miRNA:   3'- cGGCG----AGa--------CGCGCUGUUGCUGaaAGC- -5'
24405 5' -53 NC_005264.1 + 135006 0.68 0.941183
Target:  5'- cGCCGCgacagugGCGCGAucuaggcCAAUGGCgUUCGg -3'
miRNA:   3'- -CGGCGaga----CGCGCU-------GUUGCUGaAAGC- -5'
24405 5' -53 NC_005264.1 + 27963 0.68 0.941183
Target:  5'- uGUCGCUUUgggaaacGCGUGACGACGACc---- -3'
miRNA:   3'- -CGGCGAGA-------CGCGCUGUUGCUGaaagc -5'
24405 5' -53 NC_005264.1 + 160457 0.68 0.941649
Target:  5'- cGCCggGCUcCUGCG-GGCGACGGCcacUCGg -3'
miRNA:   3'- -CGG--CGA-GACGCgCUGUUGCUGaa-AGC- -5'
24405 5' -53 NC_005264.1 + 39085 0.68 0.941649
Target:  5'- cGCCgGCUCgGCG-GGCAGCGGCg---- -3'
miRNA:   3'- -CGG-CGAGaCGCgCUGUUGCUGaaagc -5'
24405 5' -53 NC_005264.1 + 41430 0.68 0.941649
Target:  5'- cGCCggGCUcCUGCG-GGCGACGGCcacUCGg -3'
miRNA:   3'- -CGG--CGA-GACGCgCUGUUGCUGaa-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.