miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24405 5' -53 NC_005264.1 + 54553 0.66 0.976736
Target:  5'- cGCCGaCUCggucaGCGCGAUucucguggggcGCGACgggUCGg -3'
miRNA:   3'- -CGGC-GAGa----CGCGCUGu----------UGCUGaa-AGC- -5'
24405 5' -53 NC_005264.1 + 94593 0.66 0.976736
Target:  5'- gGCCGCcCgcgGCGCGGgcAUGGCUUggCGg -3'
miRNA:   3'- -CGGCGaGa--CGCGCUguUGCUGAAa-GC- -5'
24405 5' -53 NC_005264.1 + 119372 0.66 0.976736
Target:  5'- aGCgaGCUCUGCGCGcgaagaucaaacACAACGcGCUUaUGg -3'
miRNA:   3'- -CGg-CGAGACGCGC------------UGUUGC-UGAAaGC- -5'
24405 5' -53 NC_005264.1 + 117007 0.66 0.974186
Target:  5'- gGgCGgUCUGCGCGGCGcAUGACg---- -3'
miRNA:   3'- -CgGCgAGACGCGCUGU-UGCUGaaagc -5'
24405 5' -53 NC_005264.1 + 6304 0.66 0.974186
Target:  5'- aGCUGCacUUGCGCGGCGA-GGCUUcgCGu -3'
miRNA:   3'- -CGGCGa-GACGCGCUGUUgCUGAAa-GC- -5'
24405 5' -53 NC_005264.1 + 51498 0.66 0.974186
Target:  5'- uCUGacaUCUGCGCGucgacUAGCGACUUUgGg -3'
miRNA:   3'- cGGCg--AGACGCGCu----GUUGCUGAAAgC- -5'
24405 5' -53 NC_005264.1 + 155944 0.66 0.974186
Target:  5'- aGCCGCgcgcugggaCUGCGCGGCucGCGgacgcucugGCUgccgUCGg -3'
miRNA:   3'- -CGGCGa--------GACGCGCUGu-UGC---------UGAa---AGC- -5'
24405 5' -53 NC_005264.1 + 95501 0.67 0.97144
Target:  5'- cGCC-CUCUuCGCGGCGGCGA---UCGu -3'
miRNA:   3'- -CGGcGAGAcGCGCUGUUGCUgaaAGC- -5'
24405 5' -53 NC_005264.1 + 5530 0.67 0.97144
Target:  5'- aGCCGCggcgUCUcGCGCGG-AGCGGgUUUCu -3'
miRNA:   3'- -CGGCG----AGA-CGCGCUgUUGCUgAAAGc -5'
24405 5' -53 NC_005264.1 + 67391 0.67 0.97144
Target:  5'- cCCGC-CgGCGCGguagcguauuccACGACGGCUUUgGg -3'
miRNA:   3'- cGGCGaGaCGCGC------------UGUUGCUGAAAgC- -5'
24405 5' -53 NC_005264.1 + 93768 0.67 0.97144
Target:  5'- cUUGCggUGCGCGACGACGAUg---- -3'
miRNA:   3'- cGGCGagACGCGCUGUUGCUGaaagc -5'
24405 5' -53 NC_005264.1 + 53056 0.67 0.97144
Target:  5'- gGCCGagUCUGCGuCGGCAGCaGACcgUUUUa -3'
miRNA:   3'- -CGGCg-AGACGC-GCUGUUG-CUG--AAAGc -5'
24405 5' -53 NC_005264.1 + 84865 0.67 0.971154
Target:  5'- cCCGCUCcgguacGCGCGGCGcCGGCaggucucuucuguUUUCGg -3'
miRNA:   3'- cGGCGAGa-----CGCGCUGUuGCUG-------------AAAGC- -5'
24405 5' -53 NC_005264.1 + 128072 0.67 0.971154
Target:  5'- aGCgGCUCaucuucgUGUaGCGACAGCGGCgacCGg -3'
miRNA:   3'- -CGgCGAG-------ACG-CGCUGUUGCUGaaaGC- -5'
24405 5' -53 NC_005264.1 + 110842 0.67 0.969694
Target:  5'- gGUCGCUCcgcGCGCGACGuccgcaauagcuacaGCGACg---- -3'
miRNA:   3'- -CGGCGAGa--CGCGCUGU---------------UGCUGaaagc -5'
24405 5' -53 NC_005264.1 + 91460 0.67 0.968489
Target:  5'- -aCGCUCcGCGCGgAUAACGugUUg-- -3'
miRNA:   3'- cgGCGAGaCGCGC-UGUUGCugAAagc -5'
24405 5' -53 NC_005264.1 + 106517 0.67 0.965328
Target:  5'- --gGCggUGCGCGACGGCGGCagcgCGg -3'
miRNA:   3'- cggCGagACGCGCUGUUGCUGaaa-GC- -5'
24405 5' -53 NC_005264.1 + 103719 0.67 0.965328
Target:  5'- aGCgGCg--GCGCGGCAucaGCGGCgg-CGg -3'
miRNA:   3'- -CGgCGagaCGCGCUGU---UGCUGaaaGC- -5'
24405 5' -53 NC_005264.1 + 84513 0.67 0.961951
Target:  5'- aGCUGUUCg--GCGACAGCGAaauguaUUUCGc -3'
miRNA:   3'- -CGGCGAGacgCGCUGUUGCUg-----AAAGC- -5'
24405 5' -53 NC_005264.1 + 106324 0.67 0.961951
Target:  5'- uGCCGC-CgGCGCGcCGAUGAUauUUUCu -3'
miRNA:   3'- -CGGCGaGaCGCGCuGUUGCUG--AAAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.