miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24405 5' -53 NC_005264.1 + 2651 0.71 0.828645
Target:  5'- -gCGCUCUGCaGCGGCAGCucuGACguccuagUCGg -3'
miRNA:   3'- cgGCGAGACG-CGCUGUUG---CUGaa-----AGC- -5'
24405 5' -53 NC_005264.1 + 3075 0.66 0.981272
Target:  5'- cGCCGCgaCUG-GCGGCGGCcgagGACccgUUCGg -3'
miRNA:   3'- -CGGCGa-GACgCGCUGUUG----CUGa--AAGC- -5'
24405 5' -53 NC_005264.1 + 3792 0.74 0.675782
Target:  5'- cGCCGCcgaUCUGCGUGGCGguccGCGAg-UUCGg -3'
miRNA:   3'- -CGGCG---AGACGCGCUGU----UGCUgaAAGC- -5'
24405 5' -53 NC_005264.1 + 3987 0.67 0.958352
Target:  5'- aGCCGCUUcG-GCGGCGGCGGgUUcucugUCGg -3'
miRNA:   3'- -CGGCGAGaCgCGCUGUUGCUgAA-----AGC- -5'
24405 5' -53 NC_005264.1 + 5279 0.69 0.926616
Target:  5'- gGCCGgaCgGCGgGGCGGCGGCUg--- -3'
miRNA:   3'- -CGGCgaGaCGCgCUGUUGCUGAaagc -5'
24405 5' -53 NC_005264.1 + 5530 0.67 0.97144
Target:  5'- aGCCGCggcgUCUcGCGCGG-AGCGGgUUUCu -3'
miRNA:   3'- -CGGCG----AGA-CGCGCUgUUGCUgAAAGc -5'
24405 5' -53 NC_005264.1 + 6304 0.66 0.974186
Target:  5'- aGCUGCacUUGCGCGGCGA-GGCUUcgCGu -3'
miRNA:   3'- -CGGCGa-GACGCGCUGUUgCUGAAa-GC- -5'
24405 5' -53 NC_005264.1 + 7040 0.68 0.954526
Target:  5'- uUCGUauUCUGCGCGcaaGCGGCGACgg-CGc -3'
miRNA:   3'- cGGCG--AGACGCGC---UGUUGCUGaaaGC- -5'
24405 5' -53 NC_005264.1 + 7881 0.66 0.981272
Target:  5'- cGCUGCgcaUCUGCGCG-CGuACGACg---- -3'
miRNA:   3'- -CGGCG---AGACGCGCuGU-UGCUGaaagc -5'
24405 5' -53 NC_005264.1 + 8708 0.71 0.828645
Target:  5'- cUCGCUCUGCGCGcGCGugGccGCcgUUUCGg -3'
miRNA:   3'- cGGCGAGACGCGC-UGUugC--UG--AAAGC- -5'
24405 5' -53 NC_005264.1 + 16171 0.66 0.981272
Target:  5'- uGCCGCcCUGCGCGGaggucggucGCGGCa---- -3'
miRNA:   3'- -CGGCGaGACGCGCUgu-------UGCUGaaagc -5'
24405 5' -53 NC_005264.1 + 23740 0.66 0.985112
Target:  5'- cGCCGCUCaGCaGCaGCcGCGACg-UCGu -3'
miRNA:   3'- -CGGCGAGaCG-CGcUGuUGCUGaaAGC- -5'
24405 5' -53 NC_005264.1 + 24362 0.68 0.954131
Target:  5'- cGCCGCUCUGgcaugaccggcuuCGCGGCuccccCGGCgg-CGa -3'
miRNA:   3'- -CGGCGAGAC-------------GCGCUGuu---GCUGaaaGC- -5'
24405 5' -53 NC_005264.1 + 26364 0.7 0.868598
Target:  5'- cGCCGCggcaggCUGCGCGGCGccgucucugagcGCGGCc-UCa -3'
miRNA:   3'- -CGGCGa-----GACGCGCUGU------------UGCUGaaAGc -5'
24405 5' -53 NC_005264.1 + 27963 0.68 0.941183
Target:  5'- uGUCGCUUUgggaaacGCGUGACGACGACc---- -3'
miRNA:   3'- -CGGCGAGA-------CGCGCUGUUGCUGaaagc -5'
24405 5' -53 NC_005264.1 + 30380 0.7 0.896726
Target:  5'- cGCCGCgUC-GCGUcucGGCGGCGGCggUCGc -3'
miRNA:   3'- -CGGCG-AGaCGCG---CUGUUGCUGaaAGC- -5'
24405 5' -53 NC_005264.1 + 31841 0.68 0.945291
Target:  5'- uGCCGCgcgCggcaagacauggGCGCGACcucgucaggcaaGugGACUUUCa -3'
miRNA:   3'- -CGGCGa--Ga-----------CGCGCUG------------UugCUGAAAGc -5'
24405 5' -53 NC_005264.1 + 34092 0.66 0.985112
Target:  5'- uGCCGCg--GCGgGcACAAUGGCUcagCGg -3'
miRNA:   3'- -CGGCGagaCGCgC-UGUUGCUGAaa-GC- -5'
24405 5' -53 NC_005264.1 + 34786 0.7 0.896726
Target:  5'- aGCCGCUCaUGCggGCGGCcauCGACg--CGg -3'
miRNA:   3'- -CGGCGAG-ACG--CGCUGuu-GCUGaaaGC- -5'
24405 5' -53 NC_005264.1 + 35443 0.66 0.983275
Target:  5'- cGCCGCgUCcgGCGCcgguaagcauCAGCGACggUCGc -3'
miRNA:   3'- -CGGCG-AGa-CGCGcu--------GUUGCUGaaAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.