miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24405 5' -53 NC_005264.1 + 136088 0.67 0.958352
Target:  5'- cGCCGCgUUGUcgcuaacgaugaGCGACGACGACg---- -3'
miRNA:   3'- -CGGCGaGACG------------CGCUGUUGCUGaaagc -5'
24405 5' -53 NC_005264.1 + 124306 0.69 0.926616
Target:  5'- gGCCGgaCgGCGgGGCGGCGGCUg--- -3'
miRNA:   3'- -CGGCgaGaCGCgCUGUUGCUGAaagc -5'
24405 5' -53 NC_005264.1 + 27963 0.68 0.941183
Target:  5'- uGUCGCUUUgggaaacGCGUGACGACGACc---- -3'
miRNA:   3'- -CGGCGAGA-------CGCGCUGUUGCUGaaagc -5'
24405 5' -53 NC_005264.1 + 160457 0.68 0.941649
Target:  5'- cGCCggGCUcCUGCG-GGCGACGGCcacUCGg -3'
miRNA:   3'- -CGG--CGA-GACGCgCUGUUGCUGaa-AGC- -5'
24405 5' -53 NC_005264.1 + 158112 0.68 0.941649
Target:  5'- cGCCgGCUCgGCG-GGCAGCGGCg---- -3'
miRNA:   3'- -CGG-CGAGaCGCgCUGUUGCUGaaagc -5'
24405 5' -53 NC_005264.1 + 150867 0.68 0.945291
Target:  5'- uGCCGCgcgCggcaagacauggGCGCGACcucgucaggcaaGugGACUUUCa -3'
miRNA:   3'- -CGGCGa--Ga-----------CGCGCUG------------UugCUGAAAGc -5'
24405 5' -53 NC_005264.1 + 126067 0.68 0.954526
Target:  5'- uUCGUauUCUGCGCGcaaGCGGCGACgg-CGc -3'
miRNA:   3'- cGGCG--AGACGCGC---UGUUGCUGaaaGC- -5'
24405 5' -53 NC_005264.1 + 131999 0.68 0.954526
Target:  5'- cGCCGC-C-GC-CGACGACGACgcgagcccgUUCGa -3'
miRNA:   3'- -CGGCGaGaCGcGCUGUUGCUGa--------AAGC- -5'
24405 5' -53 NC_005264.1 + 3987 0.67 0.958352
Target:  5'- aGCCGCUUcG-GCGGCGGCGGgUUcucugUCGg -3'
miRNA:   3'- -CGGCGAGaCgCGCUGUUGCUgAA-----AGC- -5'
24405 5' -53 NC_005264.1 + 59969 0.69 0.92112
Target:  5'- cGCCGCUCaGCcacGCGGCggUGGCcg-CGa -3'
miRNA:   3'- -CGGCGAGaCG---CGCUGuuGCUGaaaGC- -5'
24405 5' -53 NC_005264.1 + 69611 0.69 0.909402
Target:  5'- cGCCGCcCgGCGUGAgAACGACa---- -3'
miRNA:   3'- -CGGCGaGaCGCGCUgUUGCUGaaagc -5'
24405 5' -53 NC_005264.1 + 96319 0.69 0.909402
Target:  5'- uGCUGUaCUGCGCGAaAGCGAgCUcgUCGa -3'
miRNA:   3'- -CGGCGaGACGCGCUgUUGCU-GAa-AGC- -5'
24405 5' -53 NC_005264.1 + 122818 0.74 0.675782
Target:  5'- cGCCGCcgaUCUGCGUGGCGguccGCGAg-UUCGg -3'
miRNA:   3'- -CGGCG---AGACGCGCUGU----UGCUgaAAGC- -5'
24405 5' -53 NC_005264.1 + 8708 0.71 0.828645
Target:  5'- cUCGCUCUGCGCGcGCGugGccGCcgUUUCGg -3'
miRNA:   3'- cGGCGAGACGCGC-UGUugC--UG--AAAGC- -5'
24405 5' -53 NC_005264.1 + 2651 0.71 0.828645
Target:  5'- -gCGCUCUGCaGCGGCAGCucuGACguccuagUCGg -3'
miRNA:   3'- cgGCGAGACG-CGCUGUUG---CUGaa-----AGC- -5'
24405 5' -53 NC_005264.1 + 68400 0.7 0.868598
Target:  5'- cUCGCUCUGCGgGAgGACgGGCUgcUCGc -3'
miRNA:   3'- cGGCGAGACGCgCUgUUG-CUGAa-AGC- -5'
24405 5' -53 NC_005264.1 + 42729 0.7 0.875967
Target:  5'- cGCUGCgccccacuUCUGCGCGGCAcccggugggcACGACUccCGc -3'
miRNA:   3'- -CGGCG--------AGACGCGCUGU----------UGCUGAaaGC- -5'
24405 5' -53 NC_005264.1 + 34786 0.7 0.896726
Target:  5'- aGCCGCUCaUGCggGCGGCcauCGACg--CGg -3'
miRNA:   3'- -CGGCGAG-ACG--CGCUGuu-GCUGaaaGC- -5'
24405 5' -53 NC_005264.1 + 117304 0.7 0.896726
Target:  5'- uGCCGCUCUcCGCGu--GCGACUgagaagCGu -3'
miRNA:   3'- -CGGCGAGAcGCGCuguUGCUGAaa----GC- -5'
24405 5' -53 NC_005264.1 + 149407 0.7 0.896726
Target:  5'- cGCCGCgUC-GCGUcucGGCGGCGGCggUCGc -3'
miRNA:   3'- -CGGCG-AGaCGCG---CUGUUGCUGaaAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.